1JFI
Crystal Structure of the NC2-TBP-DNA Ternary Complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth C] | d1jfic1 | Alpha and beta proteins (a+b) | TBP-like | TATA-box binding protein-like | TATA-box binding protein (TBP), C-terminal domain | TATA-box binding protein (TBP), C-terminal domain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E [auth C] | d1jfic3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth A] | d1jfia_ | All alpha proteins | Histone-fold | Histone-fold | TBP-associated factors, TAFs | Negative cofactor 2, NC2, alpha chain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth B] | d1jfib_ | All alpha proteins | Histone-fold | Histone-fold | TBP-associated factors, TAFs | Negative cofactor 2, NC2, beta chain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth C] | SCOP2B Superfamily | TATA-box binding protein-like | 8036295 | 3000705 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | TATA-box binding protein-like | 8036293 | 3000705 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2 Family | TBP-associated factors, TAFs | 8022009 | 4000797 | SCOP2 (2022-06-29) |
C [auth A] | SCOP2 Superfamily | Core histone-like | 8034389 | 3001387 | SCOP2 (2022-06-29) |
D [auth B] | SCOP2 Family | TBP-associated factors, TAFs | 8022013 | 4000797 | SCOP2 (2022-06-29) |
D [auth B] | SCOP2 Superfamily | Core histone-like | 8034393 | 3001387 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth C] | TBP | e1jfiC1 | A: a+b two layers | X: TBP-like | H: TATA-box binding protein-like (From Topology) | T: TATA-box binding protein-like | F: TBP | ECOD (1.6) |
C [auth A] | CBFD_NFYB_HMF | e1jfiA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: CBFD_NFYB_HMF | ECOD (1.6) |
D [auth B] | CBFD_NFYB_HMF | e1jfiB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: CBFD_NFYB_HMF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth C] | 3.30.310.10 | Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | TATA-Binding Protein | CATH (4.3.0) |
C [auth A] | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
D [auth B] | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth C] | PF00352 | Transcription factor TFIID (or TATA-binding protein, TBP) (TBP) | Transcription factor TFIID (or TATA-binding protein, TBP) | - | Domain |
C [auth A] | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone (CBFD_NFYB_HMF) | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | This family includes archaebacterial histones and histone like transcription factors from eukaryotes. | Domain |
D [auth B] | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone (CBFD_NFYB_HMF) | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | This family includes archaebacterial histones and histone like transcription factors from eukaryotes. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
E [auth C] | IPR030491 | TATA-box binding protein, conserved site | Conserved Site |
E [auth C] | IPR000814 | TATA-box binding protein | Family |
E [auth C] | IPR012295 | TBP domain superfamily | Homologous Superfamily |
E [auth C] | IPR033710 | TATA-box binding protein, eukaryotic | Family |
C [auth A] | IPR009072 | Histone-fold | Homologous Superfamily |
C [auth A] | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain | Domain |
C [auth A] | IPR050568 | Transcription and DNA Replication Regulators | Family |
D [auth B] | IPR009072 | Histone-fold | Homologous Superfamily |
D [auth B] | IPR042225 | Negative cofactor 2 complex subunit beta | Family |
D [auth B] | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain | Domain |