1HR6
Yeast Mitochondrial Processing Peptidase
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | MPP-like | 8020875 | 4002871 | SCOP2 (2021-05-27) |
A | SCOP2 Family | MPP-like | 8020877 | 4002871 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | LuxS/MPP-like metallohydrolase | 8033255 | 3001831 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | LuxS/MPP-like metallohydrolase | 8033257 | 3001831 | SCOP2 (2021-05-27) |
C | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033255 | 3001831 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033257 | 3001831 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033255 | 3001831 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033257 | 3001831 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033257 | 3001831 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033255 | 3001831 | SCOP2B (2021-05-27) |
B | SCOP2 Family | MPP-like | 8020878 | 4002871 | SCOP2 (2021-05-27) |
B | SCOP2 Family | MPP-like | 8020879 | 4002871 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | LuxS/MPP-like metallohydrolase | 8033258 | 3001831 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | LuxS/MPP-like metallohydrolase | 8033259 | 3001831 | SCOP2 (2021-05-27) |
D | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033258 | 3001831 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033259 | 3001831 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033259 | 3001831 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033258 | 3001831 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033259 | 3001831 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | LuxS/MPP-like metallohydrolase | 8033258 | 3001831 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00675,PF05193 | e1hr6A1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675,PF05193 | ECOD (1.6) |
A | PF05193 | e1hr6A2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
C | PF00675,PF05193 | e1hr6C1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675,PF05193 | ECOD (1.6) |
C | PF05193 | e1hr6C2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
E | PF00675,PF05193 | e1hr6E1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675,PF05193 | ECOD (1.6) |
E | PF05193 | e1hr6E2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
G | PF00675,PF05193 | e1hr6G1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675,PF05193 | ECOD (1.6) |
G | PF05193 | e1hr6G2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
B | PF00675,PF05193 | e1hr6B2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675,PF05193 | ECOD (1.6) |
B | PF05193 | e1hr6B1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
D | PF00675,PF05193 | e1hr6D2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675,PF05193 | ECOD (1.6) |
D | PF05193 | e1hr6D1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
F | PF00675,PF05193 | e1hr6F2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675,PF05193 | ECOD (1.6) |
F | PF05193 | e1hr6F1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
H | PF00675,PF05193 | e1hr6H2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675,PF05193 | ECOD (1.6) |
H | PF05193 | e1hr6H1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
C | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
E | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
G | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
B | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
D | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
F | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
H | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain | |
PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family | |
PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain | |
PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007863 | Peptidase M16, C-terminal | Domain | |
IPR011765 | Peptidase M16, N-terminal | Domain | |
IPR011249 | Metalloenzyme, LuxS/M16 peptidase-like | Homologous Superfamily | |
IPR001431 | Peptidase M16, zinc-binding site | Binding Site | |
IPR007863 | Peptidase M16, C-terminal | Domain | |
IPR011765 | Peptidase M16, N-terminal | Domain | |
IPR011249 | Metalloenzyme, LuxS/M16 peptidase-like | Homologous Superfamily | |
IPR001431 | Peptidase M16, zinc-binding site | Binding Site |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
mitochondrial processing peptidase M-CSA #657 | Mitochondrial processing peptidase is a metalloendopeptidase that cleaves N-terminal signal sequences of proteins produced from nuclear information, transported from the cytosol to mitochondria. Cleavage of the signal sequence occurs at a single specific site. The enzyme shows functional and structural convergent evolution of this protease family with that of thermolysin, which has a very similar active site. | Defined by 5 residues: HIS:B-51 [auth B-70]GLU:B-54 [auth B-73]HIS:B-55 [auth B-74]GLU:B-124 [auth B-143]GLU:B-131 [auth B-150] | EC: 3.4.24.64 (PDB Primary Data) |