1HHS
RNA dependent RNA polymerase from dsRNA bacteriophage phi6
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1hhsa_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | dsRNA phage RNA-dependent RNA-polymerase | dsRNA phage RNA-dependent RNA-polymerase | PHAGE PHI 6 (Cystovirus phi6 ) [TaxId: 10879 ], | SCOPe (2.08) |
C | d1hhsc_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | dsRNA phage RNA-dependent RNA-polymerase | dsRNA phage RNA-dependent RNA-polymerase | PHAGE PHI 6 (Cystovirus phi6 ) [TaxId: 10879 ], | SCOPe (2.08) |
B | d1hhsb_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | dsRNA phage RNA-dependent RNA-polymerase | dsRNA phage RNA-dependent RNA-polymerase | PHAGE PHI 6 (Cystovirus phi6 ) [TaxId: 10879 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | dsRNA phage RNA-dependent RNA-polymerase | 8020789 | 4003700 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033169 | 3001272 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033169 | 3001272 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033169 | 3001272 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033169 | 3001272 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033169 | 3001272 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RdRP_1_C | e1hhsA1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_1_C | ECOD (1.6) |
A | RdRP_1_N | e1hhsA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_1_N | ECOD (1.6) |
C | RdRP_1_C | e1hhsC1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_1_C | ECOD (1.6) |
C | RdRP_1_N | e1hhsC2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_1_N | ECOD (1.6) |
B | RdRP_1_C | e1hhsB1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_1_C | ECOD (1.6) |
B | RdRP_1_N | e1hhsB2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_1_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.490.60 | Mainly Alpha | Orthogonal Bundle | Globin-like | Phage p2 RNA dependent RNA polymerase domain | CATH (4.3.0) |
A | 3.30.70.1600 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
A | 6.20.410.10 | Special | Other non-globular | Dihydrolipoamide Transferase | CATH (4.3.0) | |
C | 1.10.490.60 | Mainly Alpha | Orthogonal Bundle | Globin-like | Phage p2 RNA dependent RNA polymerase domain | CATH (4.3.0) |
C | 3.30.70.1600 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
C | 6.20.410.10 | Special | Other non-globular | Dihydrolipoamide Transferase | CATH (4.3.0) | |
B | 1.10.490.60 | Mainly Alpha | Orthogonal Bundle | Globin-like | Phage p2 RNA dependent RNA polymerase domain | CATH (4.3.0) |
B | 3.30.70.1600 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
B | 6.20.410.10 | Special | Other non-globular | Dihydrolipoamide Transferase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00680 | Viral RNA-dependent RNA polymerase (RdRP_1) | Viral RNA-dependent RNA polymerase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007096 | RNA-directed RNA polymerase, catalytic domain, bacteriophage | Domain | |
IPR001205 | RNA-directed RNA polymerase, C-terminal domain | Domain | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR043110 | Cystovirus, RNA-directed RNA polymerase, N-terminal | Homologous Superfamily | |
IPR016406 | Cystovirus, RNA-directed RNA polymerase | Family |