1GPO
CRYSTAL STRUCTURE OF THE RATIONALLY DESIGNED ANTIBODY M41 AS A FAB FRAGMENT
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth L] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8091539 | 3000071 | SCOP2B (2022-06-29) |
C [auth M] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8091539 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth H] | V-set_8 | e1gpoH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth H] | C1-set_1 | e1gpoH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
D [auth I] | V-set_8 | e1gpoI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D [auth I] | C1-set_1 | e1gpoI2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
A [auth L] | C1-set_4 | e1gpoL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
A [auth L] | V-set | e1gpoL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth M] | C1-set_4 | e1gpoM2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
C [auth M] | V-set | e1gpoM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth I] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth M] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth H], D [auth I] | M41-designed antibody | VH-CH1 | Mus musculus (house mouse) | IGHV3-8*02, IGHV3S1*01, IGHJ4*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202433-0) |
A [auth L], C [auth M] | M41-designed antibody | L-KAPPA | Mus musculus (house mouse) | IGKV5-43*01, IGKV5-45*01, IGKJ2*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202433-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H], D [auth I] | Heavy Chain | IGHV4 | - | - | SAbDab (2024-08-23) |
A [auth L], C [auth M] | Light Chain | IGKV6D | Kappa | - | SAbDab (2024-08-23) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth H], D [auth I] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
A [auth L], C [auth M] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth H], D [auth I] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
B [auth H], D [auth I] | IPR050380 | Immune Recognition and Response Modulators | Family |
B [auth H], D [auth I] | IPR003597 | Immunoglobulin C1-set | Domain |
B [auth H], D [auth I] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth H], D [auth I] | IPR007110 | Immunoglobulin-like domain | Domain |
A [auth L], C [auth M] | IPR003597 | Immunoglobulin C1-set | Domain |
A [auth L], C [auth M] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth L], C [auth M] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
A [auth L], C [auth M] | IPR007110 | Immunoglobulin-like domain | Domain |
A [auth L], C [auth M] | IPR050160 | Major Histocompatibility Complex/Immunoglobulin | Family |
A [auth L], C [auth M] | IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site |