1GL2
Crystal structure of an endosomal SNARE core complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1gl2a_ | Coiled coil proteins | Parallel coiled-coil | SNARE fusion complex | SNARE fusion complex | Endobrevin | RAT (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
B | d1gl2b_ | Coiled coil proteins | Parallel coiled-coil | SNARE fusion complex | SNARE fusion complex | Syntaxin 7 | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
C | d1gl2c1 | Coiled coil proteins | Parallel coiled-coil | SNARE fusion complex | SNARE fusion complex | Vesicle transport v-SNARE protein VTI1b | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
C | d1gl2c2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
D | d1gl2d_ | Coiled coil proteins | Parallel coiled-coil | SNARE fusion complex | SNARE fusion complex | Syntaxin 8 | RAT (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | SNARE fusion complex | 8023563 | 4003812 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | SNARE fusion complex | 8035943 | 3001549 | SCOP2 (2022-06-29) |
B | SCOP2 Family | SNARE fusion complex | 8023565 | 4003812 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | SNARE fusion complex | 8035945 | 3001549 | SCOP2 (2022-06-29) |
C | SCOP2 Family | SNARE fusion complex | 8023566 | 4003812 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | SNARE fusion complex | 8035946 | 3001549 | SCOP2 (2022-06-29) |
D | SCOP2 Family | SNARE fusion complex | 8023567 | 4003812 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | SNARE fusion complex | 8035947 | 3001549 | SCOP2 (2022-06-29) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.5.110 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
B | 1.20.5.110 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
C | 1.20.5.110 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
D | 1.20.5.110 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05739 | SNARE domain (SNARE) | SNARE domain | - | Family | |
PF12352 | Snare region anchored in the vesicle membrane C-terminus (V-SNARE_C) | Snare region anchored in the vesicle membrane C-terminus | Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the ves ... | Domain | |
PF05739 | SNARE domain (SNARE) | SNARE domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016444 | Synaptobrevin/Vesicle-associated membrane protein | Family | |
IPR042855 | v-SNARE, coiled-coil homology domain | Domain | |
IPR001388 | Synaptobrevin-like | Family | |
IPR006012 | Syntaxin/epimorphin, conserved site | Conserved Site | |
IPR000727 | Target SNARE coiled-coil homology domain | Domain | |
IPR010989 | SNARE | Homologous Superfamily | |
IPR006011 | Syntaxin, N-terminal domain | Domain | |
IPR045242 | Syntaxin | Family | |
IPR038407 | Vesicle transport v-SNARE, N-terminal domain superfamily | Homologous Superfamily | |
IPR000727 | Target SNARE coiled-coil homology domain | Domain | |
IPR007705 | Vesicle transport v-SNARE, N-terminal | Domain | |
IPR010989 | SNARE | Homologous Superfamily | |
IPR041875 | Syntaxin-8, SNARE domain | Domain | |
IPR000727 | Target SNARE coiled-coil homology domain | Domain | |
IPR045242 | Syntaxin | Family |