CRYSTAL STRUCTURE OF SOYBEAN PROGLYCININ A1AB1B HOMOTRIMER
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d1fxzc1 | All beta proteins | Double-stranded beta-helix | RmlC-like cupins | Germin/Seed storage 7S protein | Seed storage 7S protein | soybean (Glycine max ) [TaxId: 3847 ], | SCOPe (2.08) |
| B | d1fxzb1 | All beta proteins | Double-stranded beta-helix | RmlC-like cupins | Germin/Seed storage 7S protein | Seed storage 7S protein | soybean (Glycine max ) [TaxId: 3847 ], | SCOPe (2.08) |
| A | d1fxza1 | All beta proteins | Double-stranded beta-helix | RmlC-like cupins | Germin/Seed storage 7S protein | Seed storage 7S protein | soybean (Glycine max ) [TaxId: 3847 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | RmlC-like cupins | 8035716 | 3001825 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | RmlC-like cupins | 8035715 | 3001825 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RmlC-like cupins | 8035715 | 3001825 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RmlC-like cupins | 8035716 | 3001825 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Germin/Seed storage 7S protein | 8023335 | 4002867 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Germin/Seed storage 7S protein | 8023336 | 4002867 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | RmlC-like cupins | 8035715 | 3001825 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | RmlC-like cupins | 8035716 | 3001825 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | ClpB_D2-small | e1fxzC1 | A: a/b three-layered sandwiches | X: YrdC/RibB | H: SH3 | T: SH3 | F: ClpB_D2-small | ECOD (v294.1) |
| B | ClpB_D2-small | e1fxzB1 | A: a/b three-layered sandwiches | X: YrdC/RibB | H: SH3 | T: SH3 | F: ClpB_D2-small | ECOD (v294.1) |
| A | ClpB_D2-small | e1fxzA1 | A: a/b three-layered sandwiches | X: YrdC/RibB | H: SH3 | T: SH3 | F: ClpB_D2-small | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
| B | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
| A | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00190 | Cupin (Cupin_1) | Cupin | This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| GLYCININ G1 | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR006044 | 11-S seed storage protein, plant | Family | |
| IPR022379 | 11-S seed storage protein, conserved site | Conserved Site | |
| IPR006045 | Cupin 1 | Domain | |
| IPR011051 | RmlC-like cupin domain superfamily | Homologous Superfamily | |
| IPR050253 | Seed Storage and Functional Proteins | Family | |
| IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily |














