1FRF
CRYSTAL STRUCTURE OF THE NI-FE HYDROGENASE FROM DESULFOVIBRIO FRUCTOSOVORANS
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth S] | d1frfs_ | Multi-domain proteins (alpha and beta) | HydA/Nqo6-like | HydA/Nqo6-like | Nickel-iron hydrogenase, small subunit | Nickel-iron hydrogenase, small subunit | (Solidesulfovibrio fructosivorans ) [TaxId: 878 ], | SCOPe (2.08) |
B [auth L] | d1frfl_ | Multi-domain proteins (alpha and beta) | HydB/Nqo4-like | HydB/Nqo4-like | Nickel-iron hydrogenase, large subunit | Nickel-iron hydrogenase, large subunit | (Solidesulfovibrio fructosivorans ) [TaxId: 878 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth S] | SCOP2 Family | HydA C-terminal domain-like | 8025209 | 4000435 | SCOP2 (2022-06-29) |
A [auth S] | SCOP2 Family | Nq06/HydA N-terminal domain-like | 8054418 | 4007641 | SCOP2 (2022-06-29) |
A [auth S] | SCOP2 Superfamily | HydA C-terminal domain-like | 8037588 | 3001861 | SCOP2 (2022-06-29) |
A [auth S] | SCOP2 Superfamily | Nqo6/HydA N-terminal domain-like | 8054419 | 3002291 | SCOP2 (2022-06-29) |
B [auth L] | SCOP2 Family | Nickel-iron hydrogenase, large subunit | 8025196 | 4002888 | SCOP2 (2022-06-29) |
B [auth L] | SCOP2 Superfamily | HydB/Nqo4-like | 8037575 | 3001849 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth S] | PF01058 | e1frfS2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF01058 | ECOD (1.6) |
A [auth S] | PF14720 | e1frfS1 | A: few secondary structure elements | X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit (From Topology) | H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit (From Topology) | T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | F: PF14720 | ECOD (1.6) |
B [auth L] | PF00374 | e1frfL1 | A: beta meanders | X: all-beta domain in nickel-iron hydrogenase large subunit (From Topology) | H: all-beta domain in nickel-iron hydrogenase large subunit (From Topology) | T: all-beta domain in nickel-iron hydrogenase large subunit | F: PF00374 | ECOD (1.6) |
B [auth L] | PF00374 | e1frfL2 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: PF00374 | ECOD (1.6) |
B [auth L] | PF00374 | e1frfL3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: PF00374 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth S] | 3.40.50.700 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NADH:ubiquinone oxidoreductase-like, 20kDa subunit | CATH (4.3.0) |
A [auth S] | 4.10.480.10 | Few Secondary Structures | Irregular | Cytochrome-c3 Hydrogenase | Chain A, domain 2 | CATH (4.3.0) |
B [auth L] | 1.10.645.10 | Mainly Alpha | Orthogonal Bundle | Cytochrome-c3 Hydrogenase | chain B | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth S] | PF14720 | NiFe/NiFeSe hydrogenase small subunit C-terminal (NiFe_hyd_SSU_C) | NiFe/NiFeSe hydrogenase small subunit C-terminal | - | Family |
A [auth S] | PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6) | NADH ubiquinone oxidoreductase, 20 Kd subunit | - | Family |
B [auth L] | PF00374 | Nickel-dependent hydrogenase (NiFeSe_Hases) | Nickel-dependent hydrogenase | - | Family |