1F75
CRYSTAL STRUCTURE OF UNDECAPRENYL DIPHOSPHATE SYNTHASE FROM MICROCOCCUS LUTEUS B-P 26
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1f75a_ | Alpha and beta proteins (a/b) | Undecaprenyl diphosphate synthase | Undecaprenyl diphosphate synthase | Undecaprenyl diphosphate synthase | Undecaprenyl diphosphate synthase | (Micrococcus luteus ) [TaxId: 1270 ], | SCOPe (2.08) |
B | d1f75b_ | Alpha and beta proteins (a/b) | Undecaprenyl diphosphate synthase | Undecaprenyl diphosphate synthase | Undecaprenyl diphosphate synthase | Undecaprenyl diphosphate synthase | (Micrococcus luteus ) [TaxId: 1270 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Undecaprenyl diphosphate synthase-like | 8020562 | 4003318 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Undecaprenyl diphosphate synthase | 8032942 | 3000594 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | Undecaprenyl diphosphate synthase | 8032942 | 3000594 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01255 | e1f75A1 | A: a/b three-layered sandwiches | X: Undecaprenyl diphosphate synthase (From Topology) | H: Undecaprenyl diphosphate synthase (From Topology) | T: Undecaprenyl diphosphate synthase | F: PF01255 | ECOD (1.6) |
B | PF01255 | e1f75B1 | A: a/b three-layered sandwiches | X: Undecaprenyl diphosphate synthase (From Topology) | H: Undecaprenyl diphosphate synthase (From Topology) | T: Undecaprenyl diphosphate synthase | F: PF01255 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1180.10 | Alpha Beta | 3-Layer(aba) Sandwich | Undecaprenyl pyrophosphate synthetase | Decaprenyl diphosphate synthase-like | CATH (4.3.0) |
B | 3.40.1180.10 | Alpha Beta | 3-Layer(aba) Sandwich | Undecaprenyl pyrophosphate synthetase | Decaprenyl diphosphate synthase-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01255 | Putative undecaprenyl diphosphate synthase (Prenyltransf) | Putative undecaprenyl diphosphate synthase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018520 | Di-trans-poly-cis-decaprenylcistransferase-like, conserved site | Conserved Site | |
IPR036424 | Decaprenyl diphosphate synthase-like superfamily | Homologous Superfamily | |
IPR001441 | Decaprenyl diphosphate synthase-like | Family |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] M-CSA #543 | Undecaprenyl diphosphate synthases catalyse the sequential condensation of isopentyl diphosphate (IPP) with allylic disphosphates. The reaction generates linear prenyl diphosphates within the biosynthetic pathway of isoprenoid compounds; components which are essential to cell machinery such as cholesterol, carotenoids and dolichols. This reactions proceed through very similar mechanisms, although the enzymes differ with respect to the stereochemistry and chain length of their products. The enzyme in question is an example of the cis subclass. | EC: 2.5.1.31 (PDB Primary Data) |