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CRYSTAL STRUCTURE OF THE CONSERVED CORE DOMAIN OF VENEZUALAN EQUINE ENCEPHALITIS CAPSID PROTEIN External Resource: Annotation Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A [auth B] SCOP2B Superfamily Trypsin-like serine proteases 8044424 3000114 SCOP2B (2022-06-29) B [auth A] SCOP2 Family Viral capsid proteases-like 8032046 4002263 SCOP2 (2022-06-29) B [auth A] SCOP2 Superfamily Trypsin-like serine proteases 8044424 3000114 SCOP2 (2022-06-29) C SCOP2B Superfamily Trypsin-like serine proteases 8044424 3000114 SCOP2B (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A [auth B] Peptidase_S3 e1ep5B1 A: beta barrels X: cradle loop barrel H: RIFT-related T: FMN-binding split barrel F: Peptidase_S3 ECOD (1.6) B [auth A] Peptidase_S3 e1ep5A1 A: beta barrels X: cradle loop barrel H: RIFT-related T: FMN-binding split barrel F: Peptidase_S3 ECOD (1.6) C Peptidase_S3 e1ep5C1 A: beta barrels X: cradle loop barrel H: RIFT-related T: FMN-binding split barrel F: Peptidase_S3 ECOD (1.6)
Chains Accession Name Description Comments Source A [auth B] ,B [auth A] ,C PF00944 Alphavirus core protein (Peptidase_S3) Alphavirus core protein Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain
Chains Polymer Molecular Function Biological Process Cellular Component A [auth B] ,B [auth A] ,C CAPSID PROTEIN C
Chains Accession Name Type A [auth B] ,B [auth A] ,C IPR002533 Alphavirus E3 spike glycoprotein Domain A [auth B] ,B [auth A] ,C IPR038055 Flaviviral glycoprotein E, dimerisation domain Homologous Superfamily A [auth B] ,B [auth A] ,C IPR014756 Immunoglobulin E-set Homologous Superfamily A [auth B] ,B [auth A] ,C IPR042304 Alphavirus E2 glycoprotein, domain A Homologous Superfamily A [auth B] ,B [auth A] ,C IPR036253 Flavivirus glycoprotein, central and dimerisation domain superfamily Homologous Superfamily A [auth B] ,B [auth A] ,C IPR009003 Peptidase S1, PA clan Homologous Superfamily A [auth B] ,B [auth A] ,C IPR042305 Alphavirus E2 glycoprotein, domain B Homologous Superfamily A [auth B] ,B [auth A] ,C IPR042306 Alphavirus E2 glycoprotein, domain C Homologous Superfamily A [auth B] ,B [auth A] ,C IPR000936 Alphavirus E2 glycoprotein Family A [auth B] ,B [auth A] ,C IPR000930 Peptidase S3, togavirin Domain A [auth B] ,B [auth A] ,C IPR002548 Alphavirus E1 glycoprotein Domain A [auth B] ,B [auth A] ,C IPR000336 Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily Homologous Superfamily A [auth B] ,B [auth A] ,C IPR043504 Peptidase S1, PA clan, chymotrypsin-like fold Homologous Superfamily