Annotations: 1D5Y

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F [auth D]	d1d5yd1	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	AraC type transcriptional activator	Rob transcription factor, N-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
F [auth D]	d1d5yd3	Alpha and beta proteins (a+b)	Probable bacterial effector-binding domain	Probable bacterial effector-binding domain	Rob transcription factor, C-terminal domain	Rob transcription factor, C-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
F [auth D]	d1d5yd4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
E [auth A]	d1d5ya1	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	AraC type transcriptional activator	Rob transcription factor, N-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
E [auth A]	d1d5ya3	Alpha and beta proteins (a+b)	Probable bacterial effector-binding domain	Probable bacterial effector-binding domain	Rob transcription factor, C-terminal domain	Rob transcription factor, C-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
E [auth A]	d1d5ya4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
G [auth C]	d1d5yc1	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	AraC type transcriptional activator	Rob transcription factor, N-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
G [auth C]	d1d5yc3	Alpha and beta proteins (a+b)	Probable bacterial effector-binding domain	Probable bacterial effector-binding domain	Rob transcription factor, C-terminal domain	Rob transcription factor, C-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
G [auth C]	d1d5yc4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
H [auth B]	d1d5yb1	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	AraC type transcriptional activator	Rob transcription factor, N-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
H [auth B]	d1d5yb3	Alpha and beta proteins (a+b)	Probable bacterial effector-binding domain	Probable bacterial effector-binding domain	Rob transcription factor, C-terminal domain	Rob transcription factor, C-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
H [auth B]	d1d5yb4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth D]	SCOP2B Superfamily	Homeodomain-like	8091563	3000001	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Probable bacterial effector-binding domain	8002469	3000062	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Homeodomain-like	8091564	3000001	SCOP2B (2022-06-29)
E [auth A]	SCOP2 Family	AraC type transcriptional activator	8002467	4000332	SCOP2 (2022-06-29)
E [auth A]	SCOP2 Family	Rob transcription factor, C-terminal domain	8002468	4000297	SCOP2 (2022-06-29)
E [auth A]	SCOP2 Superfamily	Homeodomain-like	8091564	3000001	SCOP2 (2022-06-29)
E [auth A]	SCOP2 Superfamily	Probable bacterial effector-binding domain	8002469	3000062	SCOP2 (2022-06-29)
E [auth A]	SCOP2 Superfamily	Homeodomain-like	8091563	3000001	SCOP2 (2022-06-29)
G [auth C]	SCOP2B Superfamily	Homeodomain-like	8091563	3000001	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	Homeodomain-like	8091564	3000001	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	Probable bacterial effector-binding domain	8002469	3000062	SCOP2B (2022-06-29)
H [auth B]	SCOP2B Superfamily	Homeodomain-like	8091564	3000001	SCOP2B (2022-06-29)
H [auth B]	SCOP2B Superfamily	Probable bacterial effector-binding domain	8002469	3000062	SCOP2B (2022-06-29)
H [auth B]	SCOP2B Superfamily	Homeodomain-like	8091563	3000001	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth D]	HTH_AraC_2	e1d5yD4	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_AraC_2	ECOD (1.6)
F [auth D]	HTH_18_1	e1d5yD2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_18_1	ECOD (1.6)
F [auth D]	GyrI-like	e1d5yD3	A: a+b duplicates or obligate multimers	X: Probable bacterial effector-binding domain (From Topology)	H: Probable bacterial effector-binding domain (From Topology)	T: Probable bacterial effector-binding domain	F: GyrI-like	ECOD (1.6)
E [auth A]	HTH_AraC_2	e1d5yA4	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_AraC_2	ECOD (1.6)
E [auth A]	HTH_18_1	e1d5yA2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_18_1	ECOD (1.6)
E [auth A]	GyrI-like	e1d5yA3	A: a+b duplicates or obligate multimers	X: Probable bacterial effector-binding domain (From Topology)	H: Probable bacterial effector-binding domain (From Topology)	T: Probable bacterial effector-binding domain	F: GyrI-like	ECOD (1.6)
G [auth C]	HTH_AraC_2	e1d5yC4	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_AraC_2	ECOD (1.6)
G [auth C]	HTH_18_1	e1d5yC2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_18_1	ECOD (1.6)
G [auth C]	GyrI-like	e1d5yC3	A: a+b duplicates or obligate multimers	X: Probable bacterial effector-binding domain (From Topology)	H: Probable bacterial effector-binding domain (From Topology)	T: Probable bacterial effector-binding domain	F: GyrI-like	ECOD (1.6)
H [auth B]	HTH_AraC_2	e1d5yB4	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_AraC_2	ECOD (1.6)
H [auth B]	HTH_18_1	e1d5yB2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_18_1	ECOD (1.6)
H [auth B]	GyrI-like	e1d5yB3	A: a+b duplicates or obligate multimers	X: Probable bacterial effector-binding domain (From Topology)	H: Probable bacterial effector-binding domain (From Topology)	T: Probable bacterial effector-binding domain	F: GyrI-like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth D]	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)
F [auth D]	3.20.80.10	Alpha Beta	Alpha-Beta Barrel	Multidrug-efflux Transporter 1 Regulator Bmrr	Chain A	CATH (4.3.0)
E [auth A]	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)
E [auth A]	3.20.80.10	Alpha Beta	Alpha-Beta Barrel	Multidrug-efflux Transporter 1 Regulator Bmrr	Chain A	CATH (4.3.0)
G [auth C]	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)
G [auth C]	3.20.80.10	Alpha Beta	Alpha-Beta Barrel	Multidrug-efflux Transporter 1 Regulator Bmrr	Chain A	CATH (4.3.0)
H [auth B]	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)
H [auth B]	3.20.80.10	Alpha Beta	Alpha-Beta Barrel	Multidrug-efflux Transporter 1 Regulator Bmrr	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth A], F [auth D], G [auth C], H [auth B]	PF06445	GyrI-like small molecule binding domain (GyrI-like)	GyrI-like small molecule binding domain	This family contains the small molecule binding domain of a number of different bacterial transcription activators [1]. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecu ...	This family contains the small molecule binding domain of a number of different bacterial transcription activators [1]. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding [3]. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira [3].	Domain
E [auth A], F [auth D], G [auth C], H [auth B]	PF12833	Helix-turn-helix domain (HTH_18)	Helix-turn-helix domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth M], C [auth O]	DNA (5'-D(TPGPAPCPAPGPCPAPCPTPGPAPAPTPGPTPCPAPAPAP*G)-3')	-	-	-
B [auth N], D [auth P]	DNA (5'-D(APCPTPTPTPGPAPCPAPTPTPCPAPGPTPGPCPTPGPTP*C)-3')	-	-	-
E [auth A], F [auth D], G [auth C], H [auth B]	ROB TRANSCRIPTION FACTOR	transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding binding organic cyclic compound binding nucleic acid binding	-	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth A], F [auth D], G [auth C], H [auth B]	IPR009057	Homedomain-like superfamily	Homologous Superfamily
E [auth A], F [auth D], G [auth C], H [auth B]	IPR010499	Bacterial transcription activator, effector binding	Domain
E [auth A], F [auth D], G [auth C], H [auth B]	IPR050959	Multiple antibiotic resistance protein MarA-like	Family
E [auth A], F [auth D], G [auth C], H [auth B]	IPR018060	DNA binding HTH domain, AraC-type	Domain
E [auth A], F [auth D], G [auth C], H [auth B]	IPR018062	HTH domain AraC-type, conserved site	Conserved Site
E [auth A], F [auth D], G [auth C], H [auth B]	IPR011256	Regulatory factor, effector binding domain superfamily	Homologous Superfamily
E [auth A], F [auth D], G [auth C], H [auth B]	IPR029442	GyrI-like small molecule binding domain	Domain
E [auth A], F [auth D], G [auth C], H [auth B]	IPR020449	Transcription regulator HTH, AraC- type, HTH domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.