1CGM

STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth E]d1cgme_ All alpha proteins Four-helical up-and-down bundle TMV-like viral coat proteins TMV-like viral coat proteins Cucumber green mottle mosaic virus (Cucumber green mottle mosaic virus ) [TaxId: 12235 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth E]SCOP2 FamilyTMV-like viral coat proteins 8024540 4000823 SCOP2 (2022-06-29)
B [auth E]SCOP2 SuperfamilyTMV-like viral coat proteins 8036919 3001587 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth E]TMV_coate1cgmE1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth E]1.20.120.70 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Tobacco mosaic virus-like, coat proteinCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth E]PF00721Virus coat protein (TMV like) (TMV_coat)Virus coat protein (TMV like)This family contains coat proteins from tobamoviruses, hordeiviruses, Tobraviruses, Furoviruses and Potyviruses.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth I]RNA (5'-R(P*GP*AP*A)-3')---
B [auth E]CUCUMBER GREEN MOTTLE MOSAIC VIRUS -

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth E]ACE RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

PSI-MOD :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359