Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth 3]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like8100062 3000918 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]PF22663e1bbt11 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22663ECOD (1.6)
B [auth 2]PF00073e1bbt21 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)
C [auth 3]PF00073e1bbt31 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth 1]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B [auth 2]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C [auth 3]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D [auth 4]4.10.90.10 Few Secondary Structures Irregular Foot-And-Mouth Disease Virus, subunit 4 Capsid protein VP4 superfamily, PicornavirusCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 1]PF22663Picornavirus coat protein (Rhv_5)Picornavirus coat proteinThis domain is found in capsid proteins from picornavirus, such as enterovirus, rhinovirus and foot-and-mouth disease virus [1-5].Domain
B [auth 2]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
C [auth 3]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1)
B [auth 2]FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2)
C [auth 3]FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3)
D [auth 4]FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1]IPR029053Viral coat protein subunitHomologous Superfamily
A [auth 1]IPR004080Foot-and-mouth disease virus VP1 coatDomain
A [auth 1]IPR015031Capsid protein VP4, PicornavirusDomain
A [auth 1]IPR001676Picornavirus capsidDomain
A [auth 1]IPR033703Picornavirus/Calicivirus coat proteinDomain
A [auth 1]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
B [auth 2]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth 2]IPR004080Foot-and-mouth disease virus VP1 coatDomain
B [auth 2]IPR015031Capsid protein VP4, PicornavirusDomain
B [auth 2]IPR001676Picornavirus capsidDomain
B [auth 2]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth 2]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
C [auth 3]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth 3]IPR004080Foot-and-mouth disease virus VP1 coatDomain
C [auth 3]IPR015031Capsid protein VP4, PicornavirusDomain
C [auth 3]IPR001676Picornavirus capsidDomain
C [auth 3]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth 3]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily
D [auth 4]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth 4]IPR004080Foot-and-mouth disease virus VP1 coatDomain
D [auth 4]IPR015031Capsid protein VP4, PicornavirusDomain
D [auth 4]IPR001676Picornavirus capsidDomain
D [auth 4]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth 4]IPR037080Capsid protein VP4 superfamily, PicornavirusHomologous Superfamily