METHYLGLYOXAL SYNTHASE FROM ESCHERICHIA COLI
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d1b93c_ | Alpha and beta proteins (a/b) | Methylglyoxal synthase-like | Methylglyoxal synthase-like | Methylglyoxal synthase, MgsA | Methylglyoxal synthase, MgsA | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
| B | d1b93b_ | Alpha and beta proteins (a/b) | Methylglyoxal synthase-like | Methylglyoxal synthase-like | Methylglyoxal synthase, MgsA | Methylglyoxal synthase, MgsA | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
| A | d1b93a_ | Alpha and beta proteins (a/b) | Methylglyoxal synthase-like | Methylglyoxal synthase-like | Methylglyoxal synthase, MgsA | Methylglyoxal synthase, MgsA | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | Methylglyoxal synthase-like | 8044173 | 3001443 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Methylglyoxal synthase-like | 8044173 | 3001443 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Methylglyoxal synthase, MgsA | 8031795 | 4003765 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Methylglyoxal synthase-like | 8044173 | 3001443 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Pribosyltran | e1b93C1 | A: a/b three-layered sandwiches | X: HTH | H: HTH | T: winged helix domain | F: Pribosyltran | ECOD (v294.1) |
| B | MGS | e1b93B1 | A: a/b three-layered sandwiches | X: Methylglyoxal synthase-like | H: Methylglyoxal synthase-like | T: Methylglyoxal synthase-like | F: MGS | ECOD (v294.1) |
| A | Pribosyltran | e1b93A1 | A: a/b three-layered sandwiches | X: HTH | H: HTH | T: winged helix domain | F: Pribosyltran | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 3.40.50.1380 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Methylglyoxal synthase-like domain | CATH (4.3.0) |
| B | 3.40.50.1380 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Methylglyoxal synthase-like domain | CATH (4.3.0) |
| A | 3.40.50.1380 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Methylglyoxal synthase-like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02142 | MGS-like domain (MGS) | MGS-like domain | This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes ino ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR018148 | Methylglyoxal synthase, active site | Active Site | |
| IPR004363 | Methylglyoxal synthase | Family | |
| IPR011607 | Methylglyoxal synthase-like domain | Domain | |
| IPR036914 | Methylglyoxal synthase-like domain superfamily | Homologous Superfamily |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
| Chains | Enzyme Name | Description | Catalytic Residues |
|---|---|---|---|
| methylglyoxal synthase M-CSA #85 | Methylglyoxyl synthase catalyses the first reaction in the methylglyoxyl bypass of the Embden-Myerhoff pathway (glycolysis), the conversion of dihydroxyacetone phosphate into methylglyoxal and orthophosphate. The physiological benefits of this are yet to be understood as the final product of methylglyoxal synthase is cytotoxic in small quantities and has been shown to be mutagenic and to interfere with de novo protein and nucleic acid synthesis. The intermediate, D-lactoylglutathione is also toxic in millimolar quantities, interfering with intermediate filament synthesis. The methylglyoxyl bypass system is inhibited allosterically by phosphate suggesting that is only functions in times of phosphate deprivation although more recent data imply that it may facilitate the transition between conditions of high and low phosphate. There is much interest in this enzyme for two reasons: firstly it has been implicated in diabetic complications and secondly due to its ability to metabolise anti-cancer drugs rendering treatments ineffective. | Defined by 7 residues: HIS:A-19GLY:A-66ASP:A-71ASP:A-91HIS:A-98ASP:A-101ARG:C-107 | EC: 4.2.3.3 (PDB Primary Data) |














