1AL0
PROCAPSID OF BACTERIOPHAGE PHIX174
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 1] | SCOP2B Superfamily | Scaffolding protein gpD of bacteriophage procapsid | 8032652 | 3000749 | SCOP2B (2022-06-29) |
B [auth 2] | SCOP2B Superfamily | Scaffolding protein gpD of bacteriophage procapsid | 8032652 | 3000749 | SCOP2B (2022-06-29) |
D [auth 4] | SCOP2B Superfamily | Scaffolding protein gpD of bacteriophage procapsid | 8032652 | 3000749 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | Scaffolding protein gpD of bacteriophage procapsid | 8032652 | 3000749 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | ssDNA viruses | 8040766 | 3000931 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | gpD | e1al011 | A: alpha arrays | X: Scaffolding protein gpD of bacteriophage procapsid (From Topology) | H: Scaffolding protein gpD of bacteriophage procapsid (From Topology) | T: Scaffolding protein gpD of bacteriophage procapsid | F: gpD | ECOD (1.6) |
B [auth 2] | gpD | e1al021 | A: alpha arrays | X: Scaffolding protein gpD of bacteriophage procapsid (From Topology) | H: Scaffolding protein gpD of bacteriophage procapsid (From Topology) | T: Scaffolding protein gpD of bacteriophage procapsid | F: gpD | ECOD (1.6) |
D [auth 4] | gpD | e1al042 | A: alpha arrays | X: Scaffolding protein gpD of bacteriophage procapsid (From Topology) | H: Scaffolding protein gpD of bacteriophage procapsid (From Topology) | T: Scaffolding protein gpD of bacteriophage procapsid | F: gpD | ECOD (1.6) |
C [auth 3] | gpD | e1al031 | A: alpha arrays | X: Scaffolding protein gpD of bacteriophage procapsid (From Topology) | H: Scaffolding protein gpD of bacteriophage procapsid (From Topology) | T: Scaffolding protein gpD of bacteriophage procapsid | F: gpD | ECOD (1.6) |
E [auth F] | Phage_F | e1al0F1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Phage_F | ECOD (1.6) |
F [auth G] | Phage_G | e1al0G1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Phage_G | ECOD (1.6) |
G [auth B] | Phage_B | e1al0B1 | A: a+b complex topology | X: Scaffolding protein GPB (From Topology) | H: Scaffolding protein GPB (From Topology) | T: Scaffolding protein GPB | F: Phage_B | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth 1] | 1.10.1850.10 | Mainly Alpha | Orthogonal Bundle | Procapsid Of Bacteriophage Phix174, Chain 1 | Scaffold protein D | CATH (4.3.0) |
B [auth 2] | 1.10.1850.10 | Mainly Alpha | Orthogonal Bundle | Procapsid Of Bacteriophage Phix174, Chain 1 | Scaffold protein D | CATH (4.3.0) |
D [auth 4] | 1.10.1850.10 | Mainly Alpha | Orthogonal Bundle | Procapsid Of Bacteriophage Phix174, Chain 1 | Scaffold protein D | CATH (4.3.0) |
C [auth 3] | 1.10.1850.10 | Mainly Alpha | Orthogonal Bundle | Procapsid Of Bacteriophage Phix174, Chain 1 | Scaffold protein D | CATH (4.3.0) |
E [auth F] | 2.60.169.10 | Mainly Beta | Sandwich | Bacteriophage G4 Capsid Proteins Gpf, Gpg, Gpj, subunit 1 | Microviridae F protein | CATH (4.3.0) |
F [auth G] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
G [auth B] | 4.10.1260.10 | Few Secondary Structures | Irregular | Scaffolding protein gpD of bacteriophage procapsid fold | Scaffolding protein gpD of bacteriophage procapsid | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth F] | PF02305 | Capsid protein (F protein) (Phage_F) | Capsid protein (F protein) | This is a family of proteins from single-stranded DNA bacteriophages. Protein F is the major capsid component, sixty copies of which are found in the virion. | Domain |
F [auth G] | PF02306 | Major spike protein (G protein) (Phage_G) | Major spike protein (G protein) | This is a family of proteins from single-stranded DNA bacteriophages. Five G proteins, each a tight beta barrel, from twelve surface spikes. | Domain |
G [auth B] | PF02304 | Scaffold protein B (Phage_B) | Scaffold protein B | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth 1], B [auth 2], C [auth 3], D [auth 4] | SCAFFOLDING PROTEIN GPD | - | ||
E [auth F] | CAPSID PROTEIN GPF | |||
F [auth G] | SPIKE PROTEIN GPG | - |
| |
G [auth B] | SCAFFOLDING PROTEIN GPB |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth 1], B [auth 2], C [auth 3], D [auth 4] | IPR036632 | Scaffold protein D superfamily | Homologous Superfamily |
A [auth 1], B [auth 2], C [auth 3], D [auth 4] | IPR004196 | Scaffold protein D | Family |
E [auth F] | IPR016184 | Capsid/spike protein, ssDNA virus | Homologous Superfamily |
E [auth F] | IPR003514 | Microviridae F protein | Family |
E [auth F] | IPR037002 | Microviridae F protein superfamily | Homologous Superfamily |
F [auth G] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
F [auth G] | IPR016184 | Capsid/spike protein, ssDNA virus | Homologous Superfamily |
F [auth G] | IPR003515 | Major spike protein G | Family |
G [auth B] | IPR038149 | Scaffold protein B superfamily | Homologous Superfamily |
G [auth B] | IPR003513 | Scaffold protein B | Family |