Annotations: 13BF

Cryo-EM structure of COL6A3-Fab complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2B Superfamily	BPTI-like	8038452	3000628	SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth A]	Collagen alpha-3(VI) chain	structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring tensile strength enzyme regulator activity molecular function inhibitor activity peptidase regulator activity serine-type endopeptidase inhibitor activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity	cell adhesion cellular process developmental process muscle structure development animal organ development anatomical structure development muscle organ development animal gross anatomical part developmental process response to hexose response to monosaccharide response to carbohydrate response to stimulus response to glucose response to chemical cell adhesion cellular process developmental process muscle structure development animal organ development anatomical structure development muscle organ development animal gross anatomical part developmental process response to hexose response to monosaccharide response to carbohydrate response to stimulus response to glucose response to chemical response to oxygen-containing compound	solid phase of interstitial matrix extracellular matrix extracellular region elastic fiber cellular anatomical structure external encapsulating structure microfibril supramolecular fiber supramolecular polymer supramolecular complex interstitial matrix non-collagenous component of interstitial matrix membrane-bounded organelle intracellular anatomical structure solid phase of interstitial matrix extracellular matrix extracellular region elastic fiber cellular anatomical structure external encapsulating structure microfibril supramolecular fiber supramolecular polymer supramolecular complex interstitial matrix non-collagenous component of interstitial matrix membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm extracellular exosome extracellular vesicle extracellular organelle vesicle extracellular membrane-bounded organelle protein-containing complex collagen trimer collagen beaded filament basement membrane/interstitial matrix interface von-Willerbrand-factor-A-domain-rich collagen trimer complex of collagen trimers extracellular protein-containing complex collagen type VI trimer
B [auth L]	Fab light chain	-	-	-
A [auth H]	Fab heavy chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A]	IPR008160	Collagen triple helix repeat	Repeat
C [auth A]	IPR003961	Fibronectin type III	Domain
C [auth A]	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
C [auth A]	IPR020901	Proteinase inhibitor I2, Kunitz, conserved site	Conserved Site
C [auth A]	IPR036880	Pancreatic trypsin inhibitor Kunitz domain superfamily	Homologous Superfamily
C [auth A]	IPR002223	Pancreatic trypsin inhibitor Kunitz domain	Domain
C [auth A]	IPR050525	Extracellular Matrix Assembly and Organization	Family
C [auth A]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C [auth A]	IPR002035	von Willebrand factor, type A	Domain
C [auth A]	IPR041900	Collagen alpha-3(VI) chain, vWA domain	Domain
C [auth A]	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth A]	: P12111	limb-girdle muscular dystrophy Bethlem myopathy dystonic disorder Ullrich congenital muscular dystrophy congenital muscular dystrophy dystonia 27 kidney Wilms tumor Bethlem myopathy 1 Ullrich congenital muscular dystrophy 1 myopathy Emery-Dreifuss muscular dystrophy psoriasis glioblastoma Spontaneous abortion intellectual disability limb-girdle muscular dystrophy Bethlem myopathy dystonic disorder Ullrich congenital muscular dystrophy congenital muscular dystrophy dystonia 27 kidney Wilms tumor Bethlem myopathy 1 Ullrich congenital muscular dystrophy 1 myopathy Emery-Dreifuss muscular dystrophy psoriasis glioblastoma Spontaneous abortion intellectual disability ulcerative colitis lung adenocarcinoma malignant glioma atypical teratoid rhabdoid tumor medulloblastoma muscular dystrophy chronic obstructive pulmonary disease Duchenne muscular dystrophy nasopharyngeal carcinoma pancreatic ductal adenocarcinoma pilocytic astrocytoma esophageal adenocarcinoma pterygium head and neck cancer transitional cell carcinoma interstitial cystitis large cell medulloblastoma lung carcinoma malignant mesothelioma Becker muscular dystrophy muscle tissue disease myocardial infarction osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Ehlers-Danlos syndrome prostate carcinoma gastric carcinoma Sjogren syndrome heart disease tuberculosis juvenile dermatomyositis malignant ependymoma arthrogryposis malignant pancreatic neoplasm muscular disease breast cancer ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

13BF | pdb_000013bf

Cryo-EM structure of COL6A3-Fab complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation