Annotations: 12KL

SSNMR Structure of Anti-necroptosis Viral:Human Functional Hetero-amyloid M45:RIPK3

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G	PF12721	RIP homotypic interaction motif (RHIM)	RIP homotypic interaction motif	-	Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G	Receptor-interacting serine/threonine-protein kinase 3	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein-containing complex binding identical protein binding protein binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein serine kinase activity protein serine/threonine kinase binding kinase binding enzyme binding protein kinase binding protein serine/threonine kinase activity	developmental process immune system development multicellular organism development multicellular organismal process lymph node development immune system process animal organ development anatomical structure development hematopoietic or lymphoid organ development system development macromolecule modification metabolic process cellular process primary metabolic process developmental process immune system development multicellular organism development multicellular organismal process lymph node development immune system process animal organ development anatomical structure development hematopoietic or lymphoid organ development system development macromolecule modification metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process protein-containing complex organization necroptotic process ripoptosome assembly involved in necroptotic process programmed necrotic cell death cell death ripoptosome assembly cellular component organization cellular component biogenesis cellular component assembly protein-containing complex assembly cellular component organization or biogenesis programmed cell death regulation of biological process response to stimulus regulation of adaptive immune response immune response regulation of response to stimulus biological regulation regulation of immune response regulation of immune system process adaptive immune response regulation of cell motility regulation of cellular process regulation of CD8-positive, alpha-beta T cell extravasation CD8-positive, alpha-beta T cell extravasation regulation of lymphocyte migration regulation of cell migration cellular extravasation regulation of CD8-positive, alpha-beta cytotoxic T cell extravasation regulation of T cell extravasation cell migration cell motility regulation of mononuclear cell migration locomotion T cell extravasation regulation of leukocyte migration lymphocyte migration CD8-positive, alpha-beta cytotoxic T cell extravasation leukocyte migration regulation of locomotion regulation of T cell migration mononuclear cell migration T cell migration regulation of cellular extravasation regulation of biosynthetic process regulation of type II interferon production type II interferon production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process cytokine production regulation of cytokine production regulation of macromolecule biosynthetic process regulation of multicellular organismal process regulation of metabolic process regulation of apoptotic process apoptotic process regulation of programmed cell death cellular response to stimulus signaling cell communication necroptotic signaling pathway signal transduction non-canonical NF-kappaB signal transduction intracellular signal transduction intracellular signaling cassette regulation of protein modification process positive regulation of phosphorylation regulation of catalytic activity regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of biological process regulation of transferase activity positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of molecular function positive regulation of protein modification process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process positive regulation of protein kinase activity positive regulation of protein phosphorylation positive regulation of cellular process protein phosphorylation phosphorylation regulation of protein metabolic process positive regulation of catalytic activity regulation of protein kinase activity regulation of molecular function positive regulation of kinase activity regulation of kinase activity activation of protein kinase activity regulation of phosphorylation adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of immune effector process lymphocyte mediated immunity T cell mediated immunity regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains leukocyte mediated immunity regulation of T cell mediated immunity T cell mediated cytotoxicity regulation of leukocyte mediated cytotoxicity leukocyte mediated cytotoxicity immune effector process regulation of T cell mediated cytotoxicity regulation of leukocyte mediated immunity regulation of lymphocyte mediated immunity regulation of cell killing cell killing cellular developmental process hemopoiesis cell activation cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation leukocyte activation T cell differentiation in thymus T cell activation cell differentiation T cell differentiation leukocyte differentiation regulation of activated T cell proliferation regulation of leukocyte activation regulation of cell activation leukocyte proliferation activated T cell proliferation lymphocyte proliferation T cell proliferation regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation regulation of T cell activation regulation of T cell proliferation regulation of cell population proliferation mononuclear cell proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation spleen development execution phase of necroptosis positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction regulation of intrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway positive regulation of response to stimulus regulation of intracellular signal transduction intrinsic apoptotic signaling pathway regulation of signaling positive regulation of programmed cell death positive regulation of intracellular signal transduction positive regulation of apoptotic process apoptotic signaling pathway regulation of cell communication positive regulation of intrinsic apoptotic signaling pathway regulation of apoptotic signaling pathway positive regulation of signaling biological process involved in interspecies interaction between organisms defense response to virus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus gland development thymus development reactive oxygen species metabolic process supramolecular fiber organization amyloid fibril formation multicellular organismal-level homeostasis leukocyte homeostasis T cell homeostasis homeostatic process homeostasis of number of cells lymphocyte homeostasis positive regulation of reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process cellular response to oxidative stress response to oxygen-containing compound cellular response to chemical stress cellular response to oxygen-containing compound cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide response to oxidative stress cellular response to reactive oxygen species cellular response to chemical stimulus cellular response to stress response to chemical positive regulation of necroptotic process regulation of necroptotic process regulation of programmed necrotic cell death positive regulation of programmed necrotic cell death leukocyte apoptotic process lymphocyte apoptotic process regulation of activation-induced cell death of T cells activation-induced cell death of T cells regulation of T cell apoptotic process regulation of leukocyte apoptotic process regulation of lymphocyte apoptotic process T cell apoptotic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex ripoptosome catalytic complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
B, D, F, H	Ribonucleoside-diphosphate reductase large subunit-like protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ribonucleoside-diphosphate reductase activity oxidoreductase activity oxidoreductase activity, acting on CH or CH2 groups oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor catalytic activity identical protein binding protein binding	deoxyribonucleotide biosynthetic process deoxyribonucleotide metabolic process biosynthetic process metabolic process cellular process	virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G	IPR000719	Protein kinase domain	Domain
A, C, E, G	IPR025735	RIP homotypic interaction motif	Binding Site
A, C, E, G	IPR017441	Protein kinase, ATP binding site	Binding Site
A, C, E, G	IPR051681	Serine/Threonine Kinases and Pseudokinases	Family
A, C, E, G	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, C, E, G	IPR008271	Serine/threonine-protein kinase, active site	Active Site
B, D, F, H	IPR034716	Ribonucleoside-diphosphate reductase large subunit-like protein, Betaherpesviruses	Family
B, D, F, H	IPR013509	Ribonucleotide reductase large subunit, N-terminal	Domain
B, D, F, H	IPR000788	Ribonucleotide reductase large subunit, C-terminal	Domain
B, D, F, H	IPR039718	Ribonucleoside-diphosphate reductase large subunit	Family
B, D, F, H	IPR025735	RIP homotypic interaction motif	Binding Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C, E, G	: Q9Y572	calcinosis heart valve disease chronic myelogenous leukemia, BCR-ABL1 positive drug-induced liver injury language disorder Microcalcification pancreatic intraductal papillary-mucinous neoplasm fatty liver disease

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

12KL | pdb_000012kl

SSNMR Structure of Anti-necroptosis Viral:Human Functional Hetero-amyloid M45:RIPK3

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation