B [auth 1] PF00468 Ribosomal protein L34 (Ribosomal_L34) Ribosomal protein L34 - Family C [auth 2] PF01632 Ribosomal protein L35 (Ribosomal_L35p) Ribosomal protein L35 - Family J [auth D] PF00163 Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) Ribosomal protein S4/S9 N-terminal domain - Family J [auth D] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Less Domain M [auth G] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 Domain M [auth G] PF00177 Ribosomal protein S7p/S5e (Ribosomal_S7) Ribosomal protein S7p/S5e This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain P [auth J] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e Domain R [auth L] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e Domain R [auth L] PF00164 Ribosomal protein S12/S23 (Ribosom_S12_S23) Ribosomal protein S12/S23 This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain U [auth O] PF01245 Ribosomal protein L19 (Ribosomal_L19) Ribosomal protein L19 - Family AA [auth U] PF01386 Ribosomal L25p family (Ribosomal_L25p) Ribosomal L25p family Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain I [auth C] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain Domain I [auth C] PF00181 Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) Ribosomal Proteins L2, RNA binding N-terminal domain Domain I [auth C] PF07650 KH domain (KH_2) KH domain Domain I [auth C] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain H [auth B] PF00318 Ribosomal protein S2 (Ribosomal_S2) Ribosomal protein S2 - Family E [auth 4] PF01197 Ribosomal protein L31 (Ribosomal_L31) Ribosomal protein L31 - Family D [auth 3] PF00444 Ribosomal protein L36 (Ribosomal_L36) Ribosomal protein L36 Domain X [auth R] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain W [auth Q] PF00829 Ribosomal prokaryotic L21 protein (Ribosomal_L21p) Ribosomal prokaryotic L21 protein - Family V [auth P] PF00886 Ribosomal protein S16 (Ribosomal_S16) Ribosomal protein S16 - Family V [auth P] PF00453 Ribosomal protein L20 (Ribosomal_L20) Ribosomal protein L20 - Family S [auth M] PF01196 Ribosomal protein L17 (Ribosomal_L17) Ribosomal protein L17 - Family Q [auth K] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain Q [auth K] PF00411 Ribosomal protein S11 (Ribosomal_S11) Ribosomal protein S11 - Family O [auth I] PF00572 Ribosomal protein L13 (Ribosomal_L13) Ribosomal protein L13 - Family N [auth H] PF01281 Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) Ribosomal protein L9, N-terminal domain Domain L [auth F] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 Domain L [auth F] PF01250 Ribosomal protein S6 (Ribosomal_S6) Ribosomal protein S6 Domain L [auth F] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain K [auth E] PF03719 Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) Ribosomal protein S5, C-terminal domain Domain K [auth E] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family K [auth E] PF00333 Ribosomal protein S5, N-terminal domain (Ribosomal_S5) Ribosomal protein S5, N-terminal domain Domain