6BRB
Novel non-antibody protein scaffold targeting CD40L
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6brba_ | All beta proteins | TNF-like | TNF-like | TNF-like | Extracellular domain of CD40 ligand | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth D] | d6brbd_ | All beta proteins | Immunoglobulin-like beta-sandwich | Fibronectin type III | Fibronectin type III | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TNF | e6brbA1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
B [auth D] | fn3_11 | e6brbD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3_11 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00229 | TNF(Tumour Necrosis Factor) family (TNF) | TNF(Tumour Necrosis Factor) family | - | Domain | |
B [auth D] | PF00041 | Fibronectin type III domain (fn3) | Fibronectin type III domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily | |
IPR006052 | Tumour necrosis factor domain | Domain | |
IPR021184 | Tumour necrosis factor, conserved site | Conserved Site | |
IPR003263 | CD40 ligand | Family | |
B [auth D] | IPR013111 | EGF-like domain, extracellular | Domain |
B [auth D] | IPR041161 | Tenascin, EGF-like domain | Domain |
B [auth D] | IPR014716 | Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1 | Homologous Superfamily |
B [auth D] | IPR000742 | EGF-like domain | Domain |
B [auth D] | IPR002181 | Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain | Domain |
B [auth D] | IPR003961 | Fibronectin type III | Domain |
B [auth D] | IPR050991 | Extracellular Matrix Regulatory Proteins | Family |
B [auth D] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth D] | IPR036056 | Fibrinogen-like, C-terminal | Homologous Superfamily |
B [auth D] | IPR036116 | Fibronectin type III superfamily | Homologous Superfamily |