5EH2
Human PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA Sequence III
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | zf-C2H2 | e5eh2E2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2 | ECOD (1.6) |
E | zf-C2H2_1 | e5eh2E4 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_1 | ECOD (1.6) |
F | zf-C2H2 | e5eh2F3 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2 | ECOD (1.6) |
F | zf-C2H2_1 | e5eh2F2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00096 | Zinc finger, C2H2 type (zf-C2H2) | Zinc finger, C2H2 type | The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, an ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001909 | Krueppel-associated box | Domain | |
IPR046341 | SET domain superfamily | Homologous Superfamily | |
IPR013087 | Zinc finger C2H2-type | Domain | |
IPR036236 | Zinc finger C2H2 superfamily | Homologous Superfamily | |
IPR044417 | PRDM7/PRDM9, PR/SET domain | Domain | |
IPR001214 | SET domain | Domain | |
IPR036051 | KRAB domain superfamily | Homologous Superfamily | |
IPR003655 | Ancestral KRAB domain | Domain | |
IPR019041 | SSXRD motif | Conserved Site | |
IPR048414 | Histone-lysine N-methyltransferase PRDM9-like, C2H2 zinc finger-like | Domain |