4UFR
Structure of the ectodomain of LGR5 in complex with R-spondin-2 (Fu1Fu2)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4ufrb_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Growth factor receptor domain | automated matches | automated matches | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d4ufrd_ | Small proteins | Knottins (small inhibitors, toxins, lectins) | Growth factor receptor domain | automated matches | automated matches | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | Furin-like repeat | 8044724 | 4004103 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Growth factor receptor domain-like | 8052292 | 3000398 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Growth factor receptor domain-like | 8052292 | 3000398 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LRR_8_3 | e4ufrA1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_3 | ECOD (1.6) |
C | LRR_8_1 | e4ufrC1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_1 | ECOD (1.6) |
B | Furin-like_2 | e4ufrB1 | A: few secondary structure elements | X: EGF-like | H: Growth factor receptor domain (From Topology) | T: Growth factor receptor domain | F: Furin-like_2 | ECOD (1.6) |
D | Furin-like_2 | e4ufrD1 | A: few secondary structure elements | X: EGF-like | H: Growth factor receptor domain (From Topology) | T: Growth factor receptor domain | F: Furin-like_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
C | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
B | 2.10.220.10 | Mainly Beta | Ribbon | Hormone Receptor, Insulin-like Growth Factor Receptor 1 | Chain A domain 2 | CATH (4.3.0) |
D | 2.10.220.10 | Mainly Beta | Ribbon | Hormone Receptor, Insulin-like Growth Factor Receptor 1 | Chain A domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13855 | Leucine rich repeat (LRR_8) | Leucine rich repeat | - | Repeat | |
PF01462 | Leucine rich repeat N-terminal domain (LRRNT) | Leucine rich repeat N-terminal domain | - | Family | |
PF12799 | Leucine Rich repeats (2 copies) (LRR_4) | Leucine Rich repeats (2 copies) | - | Repeat | |
PF15913 | Furin-like repeat, cysteine-rich (Furin-like_2) | Furin-like repeat, cysteine-rich | The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000372 | Leucine-rich repeat N-terminal domain | Domain | |
IPR001611 | Leucine-rich repeat | Repeat | |
IPR003591 | Leucine-rich repeat, typical subtype | Repeat | |
IPR000276 | G protein-coupled receptor, rhodopsin-like | Family | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR002131 | Glycoprotein hormone receptor family | Family | |
IPR017452 | GPCR, rhodopsin-like, 7TM | Domain | |
IPR000884 | Thrombospondin type-1 (TSP1) repeat | Repeat | |
IPR043601 | R-spondin, Fu-CRD domain | Domain | |
IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | Homologous Superfamily | |
IPR051514 | R-spondin domain-containing protein | Family | |
IPR006212 | Furin-like repeat | Repeat | |
IPR009030 | Growth factor receptor cysteine-rich domain superfamily | Homologous Superfamily | |
IPR044004 | Spondin-like TSP1 domain | Domain |