3VSM
The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Baculo_E66_2nd | e3vsmA3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Hyaluronate lyase-like, C-terminal domain (From Topology) | T: Hyaluronate lyase-like, C-terminal domain | F: Baculo_E66_2nd | ECOD (1.6) |
A | Baculo_E66_1st | e3vsmA2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Baculo_E66_1st | ECOD (1.6) |
A | Lyase_8_N | e3vsmA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Lyase_8_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.50.10.100 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Chondroitin AC/alginate lyase | CATH (4.3.0) |
A | 2.70.98.100 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
A | 2.60.40.4340 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08124 | Polysaccharide lyase family 8, N terminal alpha-helical domain (Lyase_8_N) | Polysaccharide lyase family 8, N terminal alpha-helical domain | - | Repeat | |
PF04850 | Baculovirus E66 occlusion-derived virus envelope protein (Baculo_E66) | Baculovirus E66 occlusion-derived virus envelope protein | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Occlusion-derived virus envelope protein E66 | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012970 | Polysaccharide lyase 8, N-terminal alpha-helical | Domain | |
IPR043082 | Baculovirus occlusion-derived virus envelope, E66, core domain | Homologous Superfamily | |
IPR008929 | Chondroitin AC/alginate lyase | Homologous Superfamily | |
IPR006934 | Baculovirus ODV-E66, C-terminal domain | Domain |