3OD1
The crystal structure of an ATP phosphoribosyltransferase regulatory subunit/histidyl-tRNA synthetase from Bacillus halodurans C
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Class II aaRS ABD-related | 8101136 | 3000465 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Class II aaRS and biotin synthetases | 8100562 | 3000058 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain | 8100561 | 4001782 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Anticodon-binding domain of Class II aaRS | 8101135 | 4000507 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Class II aaRS and biotin synthetases | 8100562 | 3000058 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Class II aaRS ABD-related | 8101136 | 3000465 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | tRNA-synt_His | e3od1A1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: tRNA-synt_His | ECOD (1.6) |
A | hisZ_like | e3od1A2 | A: a/b three-layered sandwiches | X: Anticodon-binding domain of Class II aaRS (From Topology) | H: Anticodon-binding domain of Class II aaRS (From Topology) | T: Anticodon-binding domain of Class II aaRS | F: hisZ_like | ECOD (1.6) |
B | tRNA-synt_His | e3od1B1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: tRNA-synt_His | ECOD (1.6) |
B | hisZ_like | e3od1B2 | A: a/b three-layered sandwiches | X: Anticodon-binding domain of Class II aaRS (From Topology) | H: Anticodon-binding domain of Class II aaRS (From Topology) | T: Anticodon-binding domain of Class II aaRS | F: hisZ_like | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.930.10 | Alpha Beta | 2-Layer Sandwich | BirA Bifunctional Protein | domain 2 | CATH (4.3.0) |
A | 3.40.50.12590 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
B | 3.30.930.10 | Alpha Beta | 2-Layer Sandwich | BirA Bifunctional Protein | domain 2 | CATH (4.3.0) |
B | 3.40.50.12590 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13393 | Histidyl-tRNA synthetase (tRNA-synt_His) | Histidyl-tRNA synthetase | This is a family of class II aminoacyl-tRNA synthetase-like and ATP phosphoribosyltransferase regulatory subunits. | Domain | |
PF21996 | Histidyl-tRNA synthetase HisZ, C-terminal domain (HisZ-like) | Histidyl-tRNA synthetase HisZ, C-terminal domain | HisZ is composed of two domains for the catalytic reaction and for anticodon binding. In contrast to other class-II aminoacyl-tRNA synthetases it lacks the essential editing domain. The C-terminal anicodon binding domain consists of three-stranded pa ... | Domain |