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Data API
3O70
PHD-type zinc finger of human PHD finger protein 13
External Resource: Annotation
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
PHD
e3o70A1
A: few secondary structure elements
X: RING/U-box-like
H: RING/U-box-like
T: FYVE/PHD zinc finger
F: PHD
ECOD (1.6)
Domain Annotation: CATH
CATH Database Homepage
Chain
Domain
Class
Architecture
Topology
Homology
Provenance Source (Version)
A
3.30.40.10
Alpha Beta
2-Layer Sandwich
Herpes Virus-1
Zinc/RING finger domain, C3HC4 (zinc finger)
CATH (4.3.0)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF20826
PhD finger domain (PHD_5)
PhD finger domain
PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3].
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
PHD finger protein 13
chromatin-protein adaptor activity
protein-macromolecule adaptor activity
molecular adaptor activity
chromatin binding
binding
methylated histone binding
protein binding
modification-dependent protein binding
histone binding
methylation-dependent protein binding
cation binding
ion binding
metal ion binding
small molecule binding
cellular process
cell cycle
mitotic cell cycle
cell division
chromosome segregation
cell cycle process
mitotic nuclear division
mitotic chromosome condensation
organelle fission
chromosome organization
sister chromatid segregation
cellular component organization
organelle organization
nuclear division
cellular process
cell cycle
mitotic cell cycle
cell division
chromosome segregation
cell cycle process
mitotic nuclear division
mitotic chromosome condensation
organelle fission
chromosome organization
sister chromatid segregation
cellular component organization
organelle organization
nuclear division
mitotic cell cycle process
chromosome condensation
mitotic sister chromatid segregation
nuclear chromosome segregation
cellular component organization or biogenesis
cellular response to stimulus
regulation of cellular process
response to stimulus
regulation of cellular response to stress
regulation of primary metabolic process
nucleobase-containing compound metabolic process
cellular response to stress
response to stress
regulation of response to stress
regulation of nucleobase-containing compound metabolic process
DNA repair
regulation of biological process
biological regulation
primary metabolic process
DNA metabolic process
regulation of macromolecule metabolic process
nucleic acid metabolic process
regulation of DNA repair
DNA damage response
regulation of response to stimulus
metabolic process
macromolecule metabolic process
regulation of metabolic process
regulation of DNA metabolic process
Less
membrane-bounded organelle
intracellular anatomical structure
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
cellular anatomical entity
intracellular organelle lumen
intracellular organelle
nucleoplasm
organelle lumen
organelle
nuclear lumen
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR041947
PHF13, PHD finger
Domain
A
IPR001965
Zinc finger, PHD-type
Domain
A
IPR013083
Zinc finger, RING/FYVE/PHD-type
Homologous Superfamily
A
IPR011011
Zinc finger, FYVE/PHD-type
Homologous Superfamily
Pharos: Disease Associations
Pharos Homepage Annotation
Chains
Drug Target  
Associated Disease
A
Pharos
: 
Q86YI8
attention deficit hyperactivity disorder, inattentive type
ovarian cancer
malignant pancreatic neoplasm
pancreatic ductal adenocarcinoma
osteosarcoma
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