3GQH
Crystal Structure of the Bacteriophage phi29 gene product 12 C-terminal fragment
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Bacteriophage phi29 gp12 repeat-like | 8105989 | 3002847 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Bacteriophage phi29 gp12 repeat-like | 8105988 | 3002847 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Bacteriophage phi29 gp12 repeat-like | 8105989 | 3002847 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Bacteriophage phi29 gp12 repeat-like | 8105988 | 3002847 | SCOP2B (2022-06-29) |
C | SCOP2 Family | IMC autoproteolytic cleavage domain-like | 8047168 | 4005483 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Bacteriophage phi29 gp12 repeat-like | 8105988 | 3002847 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Bacteriophage phi29 gp12 repeat-like | 8105989 | 3002847 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_G2_C | e3gqhA1 | A: beta barrels | X: beta-clip | H: Head decoration protein D (gpD, major capsid protein D) (From Topology) | T: Head decoration protein D (gpD, major capsid protein D) | F: Peptidase_G2_C | ECOD (1.6) |
B | Peptidase_G2_C | e3gqhB1 | A: beta barrels | X: beta-clip | H: Head decoration protein D (gpD, major capsid protein D) (From Topology) | T: Head decoration protein D (gpD, major capsid protein D) | F: Peptidase_G2_C | ECOD (1.6) |
C | Peptidase_G2_C | e3gqhC1 | A: beta barrels | X: beta-clip | H: Head decoration protein D (gpD, major capsid protein D) (From Topology) | T: Head decoration protein D (gpD, major capsid protein D) | F: Peptidase_G2_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.300.10 | Mainly Beta | Beta Barrel | Virus Head Decoration Protein | Chain: A, | CATH (4.3.0) |
A | 4.10.80.40 | Few Secondary Structures | Irregular | Rhinovirus 14, subunit 4 | succinate dehydrogenase protein domain | CATH (4.3.0) |
B | 2.40.300.10 | Mainly Beta | Beta Barrel | Virus Head Decoration Protein | Chain: A, | CATH (4.3.0) |
B | 4.10.80.40 | Few Secondary Structures | Irregular | Rhinovirus 14, subunit 4 | succinate dehydrogenase protein domain | CATH (4.3.0) |
C | 2.40.300.10 | Mainly Beta | Beta Barrel | Virus Head Decoration Protein | Chain: A, | CATH (4.3.0) |
C | 4.10.80.40 | Few Secondary Structures | Irregular | Rhinovirus 14, subunit 4 | succinate dehydrogenase protein domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11962 | Peptidase_G2, IMC autoproteolytic cleavage domain (Peptidase_G2) | Peptidase_G2, IMC autoproteolytic cleavage domain | This domain is found at the very C-terminus of bacteriophage parallel beta-helical tailspike proteins. It carries the enzymic residues that induce autoproteolytic cleavage to bring about maturation of the folding process of the helix in a chaperone-l ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006626 | Parallel beta-helix repeat | Repeat | |
IPR012334 | Pectin lyase fold | Homologous Superfamily | |
IPR021865 | Peptidase G2, IMC autoproteolytic cleavage domain | Domain | |
IPR024535 | Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain | Domain | |
IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |