2C7N
Human Rabex-5 residues 1-74 in complex with Ubiquitin
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8038499 | 3000068 | SCOP2B (2022-06-29) |
C | SCOP2 Family | A20-like zinc finger | 8026120 | 4000506 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8038499 | 3000068 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8038499 | 3000068 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8038499 | 3000068 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8038499 | 3000068 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8038499 | 3000068 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ubiquitin-like | 8098440 | 3000157 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ubiquitin-like | 8098440 | 3000157 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ubiquitin-like | 8098440 | 3000157 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ubiquitin-like | 8098440 | 3000157 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Ubiquitin-like | 8098440 | 3000157 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Ubiquitin-like | 8098440 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | zf-A20 | e2c7nA1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: A20-like zinc finger (From Topology) | T: A20-like zinc finger | F: zf-A20 | ECOD (1.6) |
C | zf-A20 | e2c7nC1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: A20-like zinc finger (From Topology) | T: A20-like zinc finger | F: zf-A20 | ECOD (1.6) |
E | zf-A20 | e2c7nE1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: A20-like zinc finger (From Topology) | T: A20-like zinc finger | F: zf-A20 | ECOD (1.6) |
G | zf-A20 | e2c7nG1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: A20-like zinc finger (From Topology) | T: A20-like zinc finger | F: zf-A20 | ECOD (1.6) |
I | zf-A20 | e2c7nI1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: A20-like zinc finger (From Topology) | T: A20-like zinc finger | F: zf-A20 | ECOD (1.6) |
K | zf-A20 | e2c7nK1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: A20-like zinc finger (From Topology) | T: A20-like zinc finger | F: zf-A20 | ECOD (1.6) |
B | ubiquitin_1 | e2c7nB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
D | ubiquitin_1 | e2c7nD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
F | ubiquitin_1 | e2c7nF1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
H | ubiquitin_1 | e2c7nH1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
J | ubiquitin_1 | e2c7nJ1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
L | ubiquitin_1 | e2c7nL1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01754 | A20-like zinc finger (zf-A20) | A20-like zinc finger | - | Family | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002653 | Zinc finger, A20-type | Domain | |
IPR045046 | Vacuolar protein sorting-associated protein 9-like | Family | |
IPR003123 | VPS9 domain | Domain | |
IPR041545 | RABX5, catalytic core helical domain | Domain | |
IPR037191 | VPS9 domain superfamily | Homologous Superfamily | |
IPR019956 | Ubiquitin domain | Domain | |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR000626 | Ubiquitin-like domain | Domain |