- FASTA Sequence
- mmCIF Format
- mmCIF Format (Header)
- PDB format files are not available for large structures. Please use PDBx/mmCIF or PDBML/XML files.
- PDB Format
- PDB Format (Header)
- FASTA Sequence
- PDBx/mmCIF Format
- PDBx/mmCIF Format (gz)
- BinaryCIF Format (gz)
- PDB Format
- PDB Format (gz)
- PDBML/XML Format (gz)
- Structure Factors (CIF)
- Structure Factors (CIF - gz)
- PDB format-like files (tar.gz)
- Validation Full PDF
- Validation (XML - gz)
- Validation (CIF - gz)
- Validation 2fo-fc coefficients (CIF - gz)
- Validation fo-fc coefficients (CIF - gz)
- Biological Assembly 1 (CIF - gz)
- Biological Assembly 2 (CIF - gz)
Complex of the Yersinia enterocolitica Type III secretion export gate YscV with substrate:chaperone complex YscX:YscY
NOTE: Use your mouse to access Jsmol features and to drag, rotate, and zoom in and out of the structure.Help

Jmol._Canvas2D (Jmol) "jmolApplet0"[x]
loadScript /js/jsmol/j2s/core/package.js
loadScript /js/jsmol/j2s/core/corejmol.z.js
loadScript /js/jsmol/j2s/J/translation/PO.js
loadScript /js/jsmol/j2s/core/corescript.z.js
JSmol exec jmolApplet0 start applet null
Jmol JavaScript applet jmolApplet0__1233071877374__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript true
AppletRegistry.checkIn(jmolApplet0__1233071877374__)
vwrOptions:
{ "name":"jmolApplet0","applet":true,"documentBase":"https://www.rcsb.org/3d-view/jsmol/7QIJ","platform":"J.awtjs2d.Platform","allowjavascript":true,"fullName":"jmolApplet0__1233071877374__","codePath":"https:/js/jsmol/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"1233071877374","bgcolor":"#FFFFFF" }
setting document base to "https://www.rcsb.org/3d-view/jsmol/7QIJ"
(C) 2015 Jmol Development
Jmol Version: 14.31.4 2020-09-06 18:16
java.vendor: Java2Script (HTML5)
java.version: 2019-06-08 00:17:46 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet0 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
StatusManager callback set for APPLETREADYCallback f=Jmol._readyCallback cb=APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue AUDIOCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue SERVICECallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet0__1233071877374__ ready
script 1 started
antialiasDisplay = true
loadScript /js/jsmol/j2s/core/corescriptcmd.z.js
FileManager.getAtomSetCollectionFromFile(https://files.rcsb.org/download/7qij.cif)
FileManager opening url https://files.rcsb.org/download/7qij.cif
The Resolver thinks MMCif
loadScript /js/jsmol/j2s/J/adapter/readers/cif/MMCifReader.js
loadScript /js/jsmol/j2s/J/adapter/readers/cif/CifReader.js
loadScript /js/jsmol/j2s/JU/CifDataParser.js
loadScript /js/jsmol/j2s/core/corebio.z.js
filtering with ;BIOMOLECULE 1;
TITLE: Direct interaction of a chaperone-bound type III secretion substrate with the export gate.
Setting space group name to Hall:P 2ac 2ab
Setting space group name to HM:P 21 21 21
noncrystallographic symmetry operator 1 null
noncrystallographic symmetry operator 2 null
noncrystallographic symmetry operator 3 null
noncrystallographic symmetry operator 4 null
noncrystallographic symmetry operator 5 null
noncrystallographic symmetry operator 6 null
noncrystallographic symmetry operator 7 null
noncrystallographic symmetry operator 8 null
noncrystallographic symmetry operator 9 null
noncrystallographic symmetry operator 10 null
noncrystallographic symmetry operator 11 null
noncrystallographic symmetry operator 12 null
noncrystallographic symmetry operator 13 null
noncrystallographic symmetry operator 14 null
noncrystallographic symmetry operator 15 null
noncrystallographic symmetry operator 16 null
noncrystallographic symmetry operator 17 null
noncrystallographic symmetry operator 18 null
noncrystallographic symmetry operator 19 null
noncrystallographic symmetry operator 20 null
noncrystallographic symmetry operator 21 null
noncrystallographic symmetry operator 22 null
noncrystallographic symmetry operator 23 null
noncrystallographic symmetry operator 24 null
noncrystallographic symmetry operator 25 null
noncrystallographic symmetry operator 26 null
noncrystallographic symmetry operator 27 null
noncrystallographic symmetry operator 28 null
noncrystallographic symmetry operator 29 null
noncrystallographic symmetry operator 30 null
noncrystallographic symmetry operator 31 null
noncrystallographic symmetry operator 32 null
noncrystallographic symmetry operator 33 null
noncrystallographic symmetry operator 34 null
noncrystallographic symmetry operator 35 null
noncrystallographic symmetry operator 36 null
noncrystallographic symmetry operator 37 null
noncrystallographic symmetry operator 38 null
noncrystallographic symmetry operator 39 null
noncrystallographic symmetry operator 40 null
noncrystallographic symmetry operator 41 null
noncrystallographic symmetry operator 42 null
noncrystallographic symmetry operator 43 null
noncrystallographic symmetry operator 44 null
noncrystallographic symmetry operator 45 null
noncrystallographic symmetry operator 46 null
noncrystallographic symmetry operator 47 null
noncrystallographic symmetry operator 48 null
noncrystallographic symmetry operator 49 null
noncrystallographic symmetry operator 50 null
biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,S,T,AA,BA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA
found biomolecule 1: A,B,C,D,E,F,G,H,I,S,T,AA,BA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA
biomolecule 2 operators 1 ASYM_IDs J,K,L,M,N,O,P,Q,R,U,V,W,X,Y,Z,CA,DA,EA,FA,GA,HA,IA,JA,YA,ZA,AB,BB
found biomolecule 2: J,K,L,M,N,O,P,Q,R,U,V,W,X,Y,Z,CA,DA,EA,FA,GA,HA,IA,JA,YA,ZA,AB,BB
loadScript /js/jsmol/j2s/core/coresym.z.js
Setting space group name to Hall:P 2ac 2ab
7QIJ
loadScript /js/jsmol/j2s/JU/Tensor.js
loadScript /js/jsmol/j2s/JU/Eigen.js
loadScript /js/jsmol/j2s/javajs/api/EigenInterface.js
loadScript /js/jsmol/j2s/JU/EigenSort.js
Time for openFile(https://files.rcsb.org/download/7qij.cif): 7330 ms
reading 36540 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
Default Van der Waals type for model set to Jmol
36540 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 906 ms
TITLE: Direct interaction of a chaperone-bound type III secretion substrate with the export gate.
found biomolecule 1: A,B,C,D,E,F,G,H,I,S,T,AA,BA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA
found biomolecule 2: J,K,L,M,N,O,P,Q,R,U,V,W,X,Y,Z,CA,DA,EA,FA,GA,HA,IA,JA,YA,ZA,AB,BB
7QIJ
Script completed
Jmol script terminated
script 2 started
0 atoms hidden
36540 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
0 atoms selected
36540 atoms selected
Script completed
Jmol script terminated
script 3 started
0 atoms hidden
36540 atoms selected
defaultColorScheme = "jmol"
0 atoms selected
36540 atoms selected
Script completed
Jmol script terminated
script 4 started
Script completed
Jmol script terminated
loadScript /js/jsmol/j2s/J/g3d/HermiteRenderer.js
Scripting Options
Structure Details
Select Options
Surface options may take a long time to render, especially for larger structures
Select a different viewer
Help Links
Jmol, an open source Java viewer for chemical structures in 3D (http://www.jmol.org)