RCSB Protein Data Bank

Crystal structure of bovine cytochrome bc1 in complex with tetrahydro-quinolone inhibitor JAG021

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FileManager.getAtomSetCollectionFromFile(https://files.rcsb.org/download/6xvf.cif)

FileManager opening url https://files.rcsb.org/download/6xvf.cif

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filtering with ;BIOMOLECULE 1;

TITLE: Potent Tetrahydroquinolone Eliminates Apicomplexan Parasites.

6PE = 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE

CDL = CARDIOLIPIN

FES = FE2/S2 (INORGANIC) CLUSTER

HEC = HEME C

HEM = PROTOPORPHYRIN IX CONTAINING FE

HOH = WATER

JAG = 2-methyl-3-[4-[4-(trifluoromethyloxy)phenoxy]phenyl]-5,6,7,8-tetrahydro-3~{H}-quinolin-4-one

LMT = DODECYL-BETA-D-MALTOSIDE

PEE = 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine

PG4 = TETRAETHYLENE GLYCOL

PO4 = PHOSPHATE ION

PX4 = 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE

Setting space group name to HM:P 65 2 2

biomolecule 1 operators 1,2 ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA

assembly operator 1 x,y,z

assembly operator 2 -y-1,-x-1,-z+1/6

6XVF

2 bonds added

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Time for openFile(https://files.rcsb.org/download/6xvf.cif): 4302 ms

reading 32242 atoms

ModelSet: haveSymmetry:true haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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32242 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 696 ms

TITLE: Potent Tetrahydroquinolone Eliminates Apicomplexan Parasites.

6PE = 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE

CDL = CARDIOLIPIN

FES = FE2/S2 (INORGANIC) CLUSTER

HEC = HEME C

HEM = PROTOPORPHYRIN IX CONTAINING FE

HOH = WATER

JAG = 2-methyl-3-[4-[4-(trifluoromethyloxy)phenoxy]phenyl]-5,6,7,8-tetrahydro-3~{H}-quinolin-4-one

LMT = DODECYL-BETA-D-MALTOSIDE

PEE = 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine

PG4 = TETRAETHYLENE GLYCOL

PO4 = PHOSPHATE ION

PX4 = 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA

6XVF

2 bonds added

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0 atoms hidden

32242 atoms selected

1194 atoms selected

6 atoms selected

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32242 atoms selected

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32242 atoms selected

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1194 atoms selected

32242 atoms selected

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left:-5px; } 6XVF | pdb_00006xvf

Crystal structure of bovine cytochrome bc1 in complex with tetrahydro-quinolone inhibitor JAG021

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6XVF | pdb_00006xvf