5U4N

Crystal structure of a fructose-bisphosphate aldolase from Neisseria gonorrhoeae

• PDB DOI: https://doi.org/10.2210/pdb5U4N/pdb

• Classification: LYASE
• Organism(s): Neisseria gonorrhoeae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-12-05 Released: 2016-12-21 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 0.175 
• R-Value Work: 0.146 
• R-Value Observed: 0.147 

Starting Model: experimental

Literature

Crystal structure of a fructose-bisphosphate aldolase from Neisseria gonorrhoeae

Edwards, T.E., Horanyi, P.S., Lorimer, D., Seattle Structural Genomics Center for Infectious Disease

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 39.74 kDa 
• Atom Count: 3,033 
• Modelled Residue Count: 350 
• Deposited Residue Count: 362 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructose-1	A	362	Neisseria gonorrhoeae	Mutation(s): 0  Gene Names:  fda, WHOF_00031C, WHOF_00393, WHOG_00032C, WHOG_01091, WHOK_00031C, WHOK_01288, WHOL_00032C, WHOL_00481, WHOM_00032C, WHOM_00338, WHON_00032C, WHON_00415, WHOO_00031C, WHOO_00479, WHOP_00030C, WHOP_00448, WHOU_00032C, WHOU_01170, WHOV_00032C, WHOV_01444, WHOW_00031C, WHOW_01140, WHOX_00032C, WHOX_00360, WHOY_00032C, WHOY_00387, WHOZ_00031C, WHOZ_00311 EC: 4.1.2.13
UniProt
Find proteins for Q5FAI4 (Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)) Explore Q5FAI4  Go to UniProtKB:  Q5FAI4

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	B [auth A], C [auth A], D [auth A]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
EDO	E [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 0.175 
• R-Value Work: 0.146 
• R-Value Observed: 0.147 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.95	α = 90
b = 91.75	β = 90
c = 85.24	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-12-21 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2016-12-21
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references, Refinement description