5J9G

Structure of Lactobacillus acidophilus glyceraldehyde-3-phosphate dehydrogenase at 2.21 angstrom resolution

• PDB DOI: https://doi.org/10.2210/pdb5J9G/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Lactobacillus acidophilus NCFM
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-04-10 Released: 2017-04-19 
• Deposition Author(s): Patel, D., Pappachan, A., Singh, D.D.
• Funding Organization(s): Department of Biotechnology

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.21 Å
• R-Value Free: 0.226 
• R-Value Work: 0.203 
• R-Value Observed: 0.204 

Starting Model: experimental

Literature

Structure of Lactobacillus acidophilus glyceraldehyde-3-phosphate dehydrogenase at 2.21 angstrom resolution.

Patel, D., Pappachan, A., Singh, D.D.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 73.07 kDa 
• Atom Count: 5,215 
• Modelled Residue Count: 676 
• Deposited Residue Count: 676 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glyceraldehyde-3-p dehydrogenase	A, B	338	Lactobacillus acidophilus NCFM	Mutation(s): 0  Gene Names: LBA0698 EC: 1.2.1.12
UniProt
Find proteins for Q5FL51 (Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)) Explore Q5FL51  Go to UniProtKB:  Q5FL51

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.21 Å
• R-Value Free: 0.226 
• R-Value Work: 0.203 
• R-Value Observed: 0.204 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 114.99	α = 90
b = 114.99	β = 90
c = 113.3	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-04-19 
Deposition Author(s): Patel, D., Pappachan, A., Singh, D.D.

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Funding Organization	Location	Grant Number
Department of Biotechnology	India	--

Revision History  

• Version 1.0: 2017-04-19
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description