4KB3 | pdb_00004kb3

Crystal structure of the mitochondrial peroxiredoxin from Leishmania braziliensis in the decameric form

PDB DOI: https://doi.org/10.2210/pdb4KB3/pdb

Classification: OXIDOREDUCTASE
Organism(s): Leishmania braziliensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-04-23 Released: 2014-05-14
Deposition Author(s): Giuseppe, P.O., Souza, T.A.C.B., Morais, M.A.B., Murakami, M.T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.93 Å
R-Value Free:
0.282 (Depositor), 0.290 (DCC)
R-Value Work:
0.231 (Depositor), 0.240 (DCC)
R-Value Observed:
0.234 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the mitochondrial peroxiredoxin from Leishmania braziliensis in the decameric form

Souza, T.A.C.B., Morais, M.A.B., Giuseppe, P.O., Murakami, M.T.

To be published.

Macromolecule Content

Total Structure Weight: 213.87 kDa
Atom Count: 12,942
Modelled Residue Count: 1,647
Deposited Residue Count: 1,920
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peroxidoxin	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	192	Leishmania braziliensis	Mutation(s): 0 Gene Names: LBRM_23_0050 EC: 1.11.1
UniProt
Find proteins for A4HCL7 (Leishmania braziliensis) Explore A4HCL7 Go to UniProtKB: A4HCL7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A4HCL7
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.93 Å
R-Value Free: 0.282 (Depositor), 0.290 (DCC)
R-Value Work: 0.231 (Depositor), 0.240 (DCC)
R-Value Observed: 0.234 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.212	α = 90
b = 98.901	β = 90
c = 228.138	γ = 90

Software Package:

Software Name	Purpose
MAR345dtb	data collection
MOLREP	phasing
PHENIX	refinement
XDS	data reduction
XDS	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-05-14

Deposition Author(s):

Souza, T.A.C.B.

Revision History (Full details and data files)

Version 1.0: 2014-05-14
Type: Initial release
Version 1.1: 2024-11-20
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.