4J7Z

Thermus thermophilus DNAJ J- and G/F-DOMAINS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.216 

  • Method: EPR

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Combining crystallography and EPR: crystal and solution structures of the multidomain cochaperone DnaJ.

Barends, T.R.Brosi, R.W.Steinmetz, A.Scherer, A.Hartmann, E.Eschenbach, J.Lorenz, T.Seidel, R.Shoeman, R.L.Zimmermann, S.Bittl, R.Schlichting, I.Reinstein, J.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1540-1552

  • DOI: https://doi.org/10.1107/S0907444913010640
  • Primary Citation of Related Structures:  
    4J7Z, 4J80

  • PubMed Abstract: 

    Hsp70 chaperones assist in a large variety of protein-folding processes in the cell. Crucial for these activities is the regulation of Hsp70 by Hsp40 cochaperones. DnaJ, the bacterial homologue of Hsp40, stimulates ATP hydrolysis by DnaK (Hsp70) and thus mediates capture of substrate protein, but is also known to possess chaperone activity of its own. The first structure of a complete functional dimeric DnaJ was determined and the mobility of its individual domains in solution was investigated. Crystal structures of the complete molecular cochaperone DnaJ from Thermus thermophilus comprising the J, GF and C-terminal domains and of the J and GF domains alone showed an ordered GF domain interacting with the J domain. Structure-based EPR spin-labelling studies as well as cross-linking results showed the existence of multiple states of DnaJ in solution with different arrangements of the various domains, which has implications for the function of DnaJ.


  • Organizational Affiliation

    MPI for Medical Research, Heidelberg, Germany. thomas.barends@mpimf-heidelberg.mpg.de


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chaperone protein DnaJ 2
A, B, C, D, E
A, B, C, D, E, F
113Thermus thermophilus HB8Mutation(s): 0 
Gene Names: dnaJ2TTHA1489
UniProt
Find proteins for Q56237 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore Q56237 
Go to UniProtKB:  Q56237
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ56237
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.216 
  • Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.99α = 90
b = 85.99β = 90
c = 72.72γ = 120
Software Package:
Software NamePurpose
SHARPphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2013-07-31
    Type: Initial release
  • Version 1.1: 2013-10-09
    Changes: Database references
  • Version 1.2: 2024-02-28
    Changes: Data collection, Database references, Derived calculations