3R0P | pdb_00003r0p

Crystal structure of L-PSP putative endoribonuclease from uncultured organism

PDB DOI: https://doi.org/10.2210/pdb3R0P/pdb

Classification: HYDROLASE
Organism(s): uncultured organism
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-03-08 Released: 2011-03-23
Deposition Author(s): Cuff, M.E., Petit, P., Xu, X., Cui, H., Savchenko, A., Yakunin, A.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.212 (Depositor), 0.210 (DCC)
R-Value Work:
0.177 (Depositor), 0.180 (DCC)
R-Value Observed:
0.179 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of L-PSP putative endoribonuclease from uncultured organism

Cuff, M.E., Petit, P., Xu, X., Cui, H., Savchenko, A., Yakunin, A.F.

To be published.

Macromolecule Content

Total Structure Weight: 81.91 kDa
Atom Count: 6,046
Modelled Residue Count: 754
Deposited Residue Count: 762
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-PSP putative endoribonuclease	A, B, C, D, E A, B, C, D, E, F	127	uncultured organism	Mutation(s): 0
UniProt
Find proteins for D8VN48 (uncultured organism) Explore D8VN48 Go to UniProtKB: D8VN48
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	D8VN48
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.212 (Depositor), 0.210 (DCC)
R-Value Work: 0.177 (Depositor), 0.180 (DCC)
R-Value Observed: 0.179 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.414	α = 90
b = 82.68	β = 90
c = 99.311	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SHELX	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SHELX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-03-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-03-23
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.