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An Information Portal to 105097 Biological Macromolecular Structures

 

Structure Alignment View

Pre-calculated jFATCAT_rigid results for 4HHB.A vs. 4HHB.B .
 

This page provides a summary view of the protein structure alignment.

Structure Alignment Results
Alignment Details: Query: (
 
orange/dark grey)
HEMOGLOBIN (DEOXY) (ALPHA CHAIN)
Subject: (
 
cyan/light grey)
HEMOGLOBIN (DEOXY) (BETA CHAIN)
P-value: 0.00e+00
Score: 364.84
RMSD: 1.49
%Id: 40.8%
4HHB
PDB ID: 4HHB
Chain ID: A
Length: 141
Similarity: 99%
EC number:
4HHB
PDB ID: 4HHB
Chain ID: B
Length: 146
Similarity: 95%
EC number:
 
Comparison Method
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Click here to align other protein chains. Back to the all vs. all search results for 4HHB.A or 4HHB.B
 
 
Jmol
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Color Legend
 
4HHB.A |
 
4HHB.B
 
 
 

It is also possible to view this alignment using the stand-alone Java Web Start application.

 
 
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A detailed description of the procedure for the all vs. all alignments is available.

Algorithm: The alignment displayed on this page is based on the jFATCAT_rigid algorithm, a Java port of the original FATCAT algorithm.

Yuzhen Ye & Adam Godzik (2003)
Flexible structure alignment by chaining aligned fragment pairs allowing twists. 
Bioinformatics vol.19 suppl. 2. ii246-ii255.
[pdf  ]

RCSB PDB Comparison Tool Reference
Andreas Prlić; Spencer Bliven; Peter W. Rose; Wolfgang F. Bluhm; Chris Bizon; Adam Godzik; Philip E. Bourne (2010)
Pre-calculated protein structure alignments at the RCSB PDB website
Bioinformatics 26: 2983-2985
[PubMed]

For more information on the algorithms see here.