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PDB Newsletter
Number 18 Summer 2003 Published quarterly by the Protein Data Bank

Previous editions of the PDB Newsletter are available here Text-only version PDF version


June 15, 2003

21,248 Released atomic coordinate entries

Molecule Type

  • 19,151 proteins, peptides, and viruses
  • 1,199 nucleic acids
  • 880 protein/nucleic acid complexes
  • 18 carbohydrates

Experimental Technique

  • 18,010 diffraction and other
  • 9,629 structure factor files
  • 3,238 NMR
  • 1,567 NMR restraint files


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Message from the PDB

Data Deposition and Processing

ADIT Software Available for Download A standalone version of ADIT for use on your own desktop computer is available for download from pdb.rutgers.edu/software ... [MORE...]

PDB Deposition Statistics As of June 1, 2003, more than 2,000 structures have been deposited to the PDB... [MORE...]

Submission of Structure Factor Data to the PDB In a recent message to the PDB list server Gerard Kleywegt and Alwyn Jones have requested crystallographers worldwide to deposit structure factor data for existing and future PDB entries. The PDB strongly supports this request... [MORE...]

Clarification of the PDB Policy for "Hold for Publication" (HPUB) Entries The manual used as a guide by the PDB ADIT annotators for PDB Data Processing and Annotation is now available in PDF as well as PostScript format... [MORE...]

Data Query, Reporting, and Access

PDB Releases XML Data Files for Beta Test All of the released PDB entries are now available in XML format from the PDB beta FTP site at ftp://beta.rcsb.org/pub/pdb/uniformity/data/XML/. Comments are welcomed on these data... [MORE...]

New Features in Beta Testing PDB users are encouraged to preview the biological unit files, curated (beta) mmCIF files, redundancy reduction cluster data, and new keyword search that are now in a beta testing phase... [MORE...]

PDB Web Site Statistics

PDB Outreach

The PDB Talks with Frances C. Bernstein Frances C. Bernstein (Bernstein + Sons) was a member of the PDB team at Brookhaven National Laboratory from 1974 until 1998, where she personally processed or validated most of the entries 15 through 9,000 in the PDB... [MORE...]

PDB Focus: DNA Day April 25, 2003 marked the 50th anniversary of the publication of the description of the structure of the double helix... [MORE...]

PDB Art at Purdue University Images from the PDB's "Art of Science" exhibit were on display at Purdue University from April 11 through May 17, 2003... [MORE...]

Protein Data Bank CD-ROM News First Update Release, Previous PDB CD-ROM Sets Available... [MORE...]

PDB Poster Prize The PDB is pleased to announce the initiation of the PDB Poster Prize, which will recognize student poster presentations involving macromolecular crystallography... [MORE...]

PDB Molecules of the Quarter: RNA Polymerase, Hemoglobin, and Green Fluorescent Protein (GFP)



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