9BHR

Crystal structure of the WDR domain of human DCAF1 in complex with OICR-40155 compound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.148 
  • R-Value Observed: 0.150 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


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Literature

Crystal structure of the WDR domain of human DCAF1 in complex with OICR-40155 compound

kimani, S.Dong, A.Li, Y.Seitova, A.Al-Awar, R.Krausser, C.Wilson, B.Ackloo, S.Arrowsmith, C.H.Edwards, A.M.Halabelian, L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DDB1- and CUL4-associated factor 1
A, B
315Homo sapiensMutation(s): 2 
Gene Names: DCAF1KIAA0800RIPVPRBP
EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y4B6 (Homo sapiens)
Explore Q9Y4B6 
Go to UniProtKB:  Q9Y4B6
PHAROS:  Q9Y4B6
GTEx:  ENSG00000145041 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y4B6
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1API (Subject of Investigation/LOI)
Query on A1API

Download Ideal Coordinates CCD File 
C [auth A],
D [auth B]
(4P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-4-(4-chloro-2-fluorophenyl)-5-{(1E)-3-[(2-methoxyethyl)amino]-3-oxoprop-1-en-1-yl}-1H-pyrrole-3-carboxamide
C26 H24 Cl2 F2 N4 O4
GUWRELPYWXMMMM-WMWRJIBUSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.148 
  • R-Value Observed: 0.150 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.769α = 90
b = 87.869β = 97.44
c = 73.243γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data scaling
REFMACphasing
HKL-3000data reduction

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other private--

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-08
    Type: Initial release