Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase
Liu, F., Shoichet, B.K., Bassim, V.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
AmpC Beta-lactamase | 377 | Escherichia coli | Mutation(s): 0  Gene Names: ampC, ampA, b4150, JW4111 EC: 3.5.2.6 | ![]() | |
UniProt | |||||
Find proteins for P00811 (Escherichia coli (strain K12)) Explore P00811  Go to UniProtKB:  P00811 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00811 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A1AUZ (Subject of Investigation/LOI) Query on A1AUZ | C [auth A], D [auth B] | N-[(3M)-3-(5-chloro-1,2,3-thiadiazol-4-yl)phenyl]-5-methyl-3-oxo-2,3-dihydro-1,2-oxazole-4-sulfonamide C12 H9 Cl N4 O4 S2 DQBOCBWXJZVOII-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 119.774 | α = 90 |
b = 77.03 | β = 115.47 |
c = 100.079 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | -- |