8TLQ

Cryo-EM structure of the Rev1-Polzeta-DNA-dCTP complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.53 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Cryo-EM structure of the Rev1-Pol zeta holocomplex reveals the mechanism of their cooperativity in translesion DNA synthesis.

Malik, R.Johnson, R.E.Ubarretxena-Belandia, I.Prakash, L.Prakash, S.Aggarwal, A.K.

(2024) Nat Struct Mol Biol 31: 1394-1403

  • DOI: https://doi.org/10.1038/s41594-024-01302-w
  • Primary Citation of Related Structures:  
    8TLQ, 8TLT

  • PubMed Abstract: 

    Rev1-Polζ-dependent translesion synthesis (TLS) of DNA is crucial for maintaining genome integrity. To elucidate the mechanism by which the two polymerases cooperate in TLS, we determined the cryogenic electron microscopic structure of the Saccharomyces cerevisiae Rev1-Polζ holocomplex in the act of DNA synthesis (3.53 Å). We discovered that a composite N-helix-BRCT module in Rev1 is the keystone of Rev1-Polζ cooperativity, interacting directly with the DNA template-primer and with the Rev3 catalytic subunit of Polζ. The module is positioned akin to the polymerase-associated domain in Y-family TLS polymerases and is set ideally to interact with PCNA. We delineate the full extent of interactions that the carboxy-terminal domain of Rev1 makes with Polζ and identify potential new druggable sites to suppress chemoresistance from first-line chemotherapeutics. Collectively, our results provide fundamental new insights into the mechanism of cooperativity between Rev1 and Polζ in TLS.


  • Organizational Affiliation

    Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA. radhika.malik@mssm.edu.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA polymerase zeta catalytic subunit1,538Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: REV3PSO1YPL167CP2535
EC: 2.7.7.7
UniProt
Find proteins for P14284 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP14284
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA polymerase zeta processivity subunitB [auth D],
C [auth E]
245Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: REV7YIL139C
UniProt
Find proteins for P38927 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP38927
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA polymerase delta small subunitD [auth F]494Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PACBIOSEQ_LOCUS3277PACBIOSEQ_LOCUS3308
EC: 2.7.7.7
UniProt
Find proteins for P46957 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP46957
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA polymerase delta subunit 3E [auth G]350Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: POL32YJR043CJ1626
UniProt
Find proteins for P47110 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP47110
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA repair protein REV1F [auth B]985Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: REV1YOR346WO6339
EC: 2.7.7
UniProt
Find proteins for P12689 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP12689
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Entity ID: 6
MoleculeChains LengthOrganismImage
DNA (30-MER)G [auth P],
H [auth T]
30DNA molecule
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.53 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR35-GM131780

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-15
    Type: Initial release
  • Version 1.1: 2024-05-22
    Changes: Database references
  • Version 1.2: 2024-09-25
    Changes: Data collection, Database references
  • Version 1.3: 2024-10-02
    Changes: Data collection, Database references