8SUO

BA.2/AZD1061/AZD3152 structure analysis

• PDB DOI: https://doi.org/10.2210/pdb8SUO/pdb

• Classification: VIRAL PROTEIN/IMMUNE SYSTEM
• Organism(s): Homo sapiens, Severe acute respiratory syndrome coronavirus 2
• Expression System: Cricetulus griseus
• Mutation(s): No 


• Deposited: 2023-05-12 Released: 2024-05-15 
• Deposition Author(s): Oganesyan, V., van Dyk, N., Dippel, A., Barnes, A., O'Connor, E.
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 0.332 
• R-Value Work: 0.279 

Literature

X-ray crystal structure of BA.2 RBD bound by two neutralizing antibodies

Oganesyan, V., van Dyk, N., Dippel, A., Barnes, A., O'Connor, E., Riguero, V., Taleb, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 5-mer - A2B1C1D1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 5-mer - A2B2C1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 117.64 kDa 
• Atom Count: 8,175 
• Modelled Residue Count: 1,075 
• Deposited Residue Count: 1,091 
• Unique protein chains: 5

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AZD1061 heavy chain	A [auth I]	234	Homo sapiens	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
AZD1061 light chain	B [auth M]	219	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
AZD3152 heavy chain	C [auth H]	228	Homo sapiens	Mutation(s): 0

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
AZD3152 light chain	D [auth L]	215	Homo sapiens	Mutation(s): 0

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike protein S1	E [auth A]	195	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 0
UniProt
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC2  Go to UniProtKB:  P0DTC2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 0.332 
• R-Value Work: 0.279 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.69	α = 90
b = 138	β = 90
c = 188.72	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-15 
Deposition Author(s): Oganesyan, V., van Dyk, N., Dippel, A., Barnes, A., O'Connor, E.

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Funding Organization	Location	Grant Number
Other private	United States	--

Revision History  

• Version 1.0: 2024-05-15
  Type: Initial release