Structural and biochemical studies into Citrobacter rodentium contact dependent growth inhibition (CDI) peptidase toxin
Cuthbert, B.J., Goulding, C.W., Hayes, C.S., Nhan, D.Q.To be published.
Experimental Data Snapshot
Starting Models: in silico, experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Contact-dependent inhibitor A | A [auth B], C [auth A] | 143 | Citrobacter rodentium | Mutation(s): 1  Gene Names: stbD, E2R62_11320 | |
UniProt | |||||
Find proteins for A0A482PFX0 (Citrobacter rodentium) Explore A0A482PFX0  Go to UniProtKB:  A0A482PFX0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A482PFX0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CdiI (immunity protein) | B [auth C], D | 95 | Citrobacter rodentium | Mutation(s): 0  Gene Names: ROD_29401 | |
UniProt | |||||
Find proteins for D2TJN9 (Citrobacter rodentium (strain ICC168)) Explore D2TJN9  Go to UniProtKB:  D2TJN9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | D2TJN9 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | E [auth C], F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 79.349 | α = 90 |
b = 114.41 | β = 90 |
c = 114.639 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |