8SOY

Cryo-EM structure of Enoyl-CoA hydratase from Mycobacterium smegmatis

PDB DOI: https://doi.org/10.2210/pdb8SOY/pdb
EM Map EMD-40671: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Mycolicibacterium smegmatis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-04-30 Released: 2023-05-10
Deposition Author(s): Shek, R., Quispe, J., Staker, B., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM structure of Enoyl-CoA hydratase from Mycobacterium smegmatis

Shek, R., Quispe, J., Staker, B., Phan, I.Q., Barrett, L.Q., Van Voorhis, W.C.

To be published.

Macromolecule Content

Total Structure Weight: 158.28 kDa
Atom Count: 10,074
Modelled Residue Count: 1,422
Deposited Residue Count: 1,512
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase EchA21	A, B, C, D, E A, B, C, D, E, F	252	Mycolicibacterium smegmatis	Mutation(s): 0 Gene Names: echA8_4
UniProt
Find proteins for A0A653F8X5 (Mycolicibacterium smegmatis) Explore A0A653F8X5 Go to UniProtKB: A0A653F8X5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A653F8X5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.85 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.14
RECONSTRUCTION	cryoSPARC	4.2.1

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-05-10

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	--

Revision History (Full details and data files)

Version 1.0: 2023-05-10
Type: Initial release
Version 1.1: 2024-06-19
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.