8SBF

Full-length structure of the LysR-type transcriptional regulator, ACIAD0746, from Acinetobacter baylyi

PDB DOI: https://doi.org/10.2210/pdb8SBF/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Acinetobacter baylyi ADP1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-04-03 Released: 2024-04-17
Deposition Author(s): Momany, C., Nune, M., Brondani, J.C., Afful, D., Neidle, E., Galloway, N.R.
Funding Organization(s): National Science Foundation (NSF, United States)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.29 Å
R-Value Free: 0.258
R-Value Work: 0.211
R-Value Observed: 0.214

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

FinR, a LysR-type transcriptional regulator involved in sulfur homeostasis with homologs in diverse microorganisms

Momany, C., Nune, M., Brondani, J.C., Afful, D., Neidle, E., Galloway, N.R.

To be published.

Macromolecule Content

Total Structure Weight: 134.36 kDa
Atom Count: 9,823
Modelled Residue Count: 1,177
Deposited Residue Count: 1,200
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative transcriptional regulator (LysR family)	A, B [auth C], C [auth B], D	300	Acinetobacter baylyi ADP1	Mutation(s): 0 Gene Names: ACIAD0746
UniProt
Find proteins for Q6FE56 (Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)) Explore Q6FE56 Go to UniProtKB: Q6FE56
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6FE56
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain I [auth B] SDF format, chain J [auth B] SDF format, chain K [auth B] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B] MOL2 format, chain K [auth B] mmCIF format, chain I [auth B] mmCIF format, chain J [auth B] mmCIF format, chain K [auth B]	I [auth B], J [auth B], K [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain I [auth B] Focus chain J [auth B] Focus chain K [auth B] Interactions & Density Focus chain I [auth B] Focus chain J [auth B] Focus chain K [auth B]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain F [auth C] SDF format, chain G [auth C] SDF format, chain L [auth B] SDF format, chain M [auth B] MOL2 format, chain F [auth C] MOL2 format, chain G [auth C] MOL2 format, chain L [auth B] MOL2 format, chain M [auth B] mmCIF format, chain F [auth C] mmCIF format, chain G [auth C] mmCIF format, chain L [auth B] mmCIF format, chain M [auth B]	F [auth C], G [auth C], L [auth B], M [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain F [auth C] Focus chain G [auth C] Focus chain L [auth B] Focus chain M [auth B] Interactions & Density Focus chain F [auth C] Focus chain G [auth C] Focus chain L [auth B] Focus chain M [auth B]
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain H [auth C] SDF format, chain N [auth B] MOL2 format, chain E [auth A] MOL2 format, chain H [auth C] MOL2 format, chain N [auth B] mmCIF format, chain E [auth A] mmCIF format, chain H [auth C] mmCIF format, chain N [auth B]	E [auth A], H [auth C], N [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain H [auth C] Focus chain N [auth B] Interactions & Density Focus chain E [auth A] Focus chain H [auth C] Focus chain N [auth B]