8OXR

Structure of the N-terminal didomain d1_d2 of the Thrombospondin type-1 domain-containing 7A

• PDB DOI: https://doi.org/10.2210/pdb8OXR/pdb

• Classification: CELL ADHESION
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2023-05-02 Released: 2024-05-15 
• Deposition Author(s): Bochel, A., Mortensen, S.A., Chojnowski, G., Wilmanns, M.
• Funding Organization(s): German Research Foundation (DFG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.292 
• R-Value Work: 0.227 

Starting Model: in silico

Literature

Structure of the N-terminal didomain d1_d2 of the Thrombospondin type-1 domain-containing 7A

Bochel, A., Mortensen, S.A., Seifert, L., Hengel, F.E., Jeffries, C.M., Chojnowski, G., Kretz, O., Huber, T.B., Tomas, N.M., Wilmanns, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: SAXS

Macromolecule Content

• Total Structure Weight: 16.52 kDa 
• Atom Count: 1,069 
• Modelled Residue Count: 127 
• Deposited Residue Count: 145 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thrombospondin type-1 domain-containing protein 7A	A	145	Homo sapiens	Mutation(s): 0  Gene Names: THSD7A, KIAA0960
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UPZ6 (Homo sapiens) Explore Q9UPZ6  Go to UniProtKB:  Q9UPZ6
PHAROS:  Q9UPZ6 GTEx:  ENSG00000005108

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.292 
• R-Value Work: 0.227 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.843	α = 90
b = 108.714	β = 90
c = 53.536	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-15 
Deposition Author(s): Bochel, A., Mortensen, S.A., Chojnowski, G., Wilmanns, M.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	264599542

Revision History  

• Version 1.0: 2024-05-15
  Type: Initial release
  
• Version 1.1: 2024-11-06
  Changes: Structure summary