Download MendeleyStructural and functional studies of geldanamycin amide synthase ShGdmF
Ewert, W., Bartens, C., Heutling, A., Ongouta, J., Vogt, M., Kishore, A., Zeilinger, C., Preller, M., Kirschning, A.To be published.
8OSV
Structural and functional studies of geldanamycin amide synthase ShGdmF
- PDB DOI: https://doi.org/10.2210/pdb8OSV/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Streptomyces hygroscopicus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-04-20 Released: 2024-05-01
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.28 Å
- R-Value Free: 0.180
- R-Value Work: 0.165
- R-Value Observed: 0.166
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GdmF | 263 | Streptomyces hygroscopicus | Mutation(s): 0 Gene Names: gdmF |  | |
UniProt | |||||
Find proteins for Q84G21 (Streptomyces hygroscopicus) Explore Q84G21 Go to UniProtKB: Q84G21 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q84G21 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| W0K (Subject of Investigation/LOI) Query on W0K | B [auth A] | ~{N}-(2-sulfanylethyl)ethanamide C4 H9 N O S AXFZADXWLMXITO-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | C [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.28 Å
- R-Value Free: 0.180
- R-Value Work: 0.165
- R-Value Observed: 0.166
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 74.304 | α = 90 |
| b = 95.288 | β = 90 |
| c = 86.591 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| PHENIX | refinement |
| Aimless | data scaling |
| Coot | model building |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-05-01 Deposition Author(s): Ewert, W., Zeilinger, C., Kirschning, A., Preller, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-05-01
Type: Initial release
