The crystal structure of SARS-CoV-2 main protease in complex with Compound 55
Zhao, Y., Zhu, Y., Rao, Z.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
3C-like proteinase nsp5 | 306 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0  EC: 3.4.22.69 | ||
UniProt | |||||
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTD1  Go to UniProtKB:  P0DTD1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0DTD1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
AJF (Subject of Investigation/LOI) Query on AJF | B [auth A] | methyl (2S)-2-[(3-ethanoylphenyl)carbonylamino]-3-phenyl-propanoate C19 H19 N O4 KLOCVZYWJLNHFL-KRWDZBQOSA-N | |||
DMS Query on DMS | C [auth A], D [auth A], E [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
H2S Query on H2S | F [auth A] | HYDROSULFURIC ACID H2 S RWSOTUBLDIXVET-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 97.561 | α = 90 |
b = 81.531 | β = 114.4 |
c = 51.754 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XSCALE | data scaling |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | 32200131 |