8IHG

Crystal structure of aminophenol dioxygenase from Pseudomonas species AP-3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.86 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.181 

Starting Model: experimental
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Ligand Structure Quality Assessment 


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Literature

Crystal structure of aminophenol dioxygenase from Pseudomonas species AP-3

Shi, Q.L.Su, D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
2-aminophenol 1,6-dioxygenase beta subunit
A, C
305Pseudomonas sp.Mutation(s): 0 
Gene Names: amnB
EC: 1.13.11.74
UniProt
Find proteins for O33477 (Pseudomonas sp)
Explore O33477 
Go to UniProtKB:  O33477
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO33477
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
2-aminophenol 1,6-dioxygenase alpha subunit
B, D
272Pseudomonas sp.Mutation(s): 0 
Gene Names: amnA
UniProt
Find proteins for O33478 (Pseudomonas sp)
Explore O33478 
Go to UniProtKB:  O33478
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO33478
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
2AF (Subject of Investigation/LOI)
Query on 2AF

Download Ideal Coordinates CCD File 
F [auth A],
G [auth C]
2-AMINOPHENOL
C6 H7 N O
CDAWCLOXVUBKRW-UHFFFAOYSA-N
GOL (Subject of Investigation/LOI)
Query on GOL

Download Ideal Coordinates CCD File 
H [auth C],
J [auth C]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
E [auth A],
I [auth C]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.86 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.181 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 153.475α = 90
b = 153.475β = 90
c = 312.036γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2017YFA0505903

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-28
    Type: Initial release