Structural and mechanistic insights into cancer patient-derived mutations in Pyruvate Kinase muscle isoform 2
Upadhyay, S., Kumar, A., Patel, A.K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Pyruvate kinase PKM | 551 | Homo sapiens | Mutation(s): 1  Gene Names: PKM, OIP3, PK2, PK3, PKM2 EC: 2.7.1.40 (PDB Primary Data), 2.7.11.1 (PDB Primary Data), 2.7.10.2 (PDB Primary Data) | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P14618 (Homo sapiens) Explore P14618  Go to UniProtKB:  P14618 | |||||
PHAROS:  P14618 GTEx:  ENSG00000067225  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14618 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FBP (Subject of Investigation/LOI) Query on FBP | F [auth A], H [auth B], N [auth C], P [auth D] | 1,6-di-O-phosphono-beta-D-fructofuranose C6 H14 O12 P2 RNBGYGVWRKECFJ-ARQDHWQXSA-N | |||
OXL Query on OXL | E [auth A], I [auth B], K [auth C], Q [auth D] | OXALATE ION C2 O4 MUBZPKHOEPUJKR-UHFFFAOYSA-L | |||
EDO Query on EDO | L [auth C], M [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | G [auth A], J [auth B], O [auth C], R [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 80.4 | α = 90 |
b = 151.769 | β = 100.59 |
c = 89.85 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
PHENIX | refinement |
Aimless | data scaling |
PHASER | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
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Department of Biotechnology (DBT, India) | India | BT/RLF/Re-entry/57/2012 |