8HEW

Potato 14-3-3 St14f


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.243 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


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Literature

Multifunctional chemical inhibitors of the florigen activation complex discovered by structure-based high-throughput screening.

Taoka, K.I.Kawahara, I.Shinya, S.Harada, K.I.Yamashita, E.Shimatani, Z.Furuita, K.Muranaka, T.Oyama, T.Terada, R.Nakagawa, A.Fujiwara, T.Tsuji, H.Kojima, C.

(2022) Plant J 112: 1337-1349

  • DOI: https://doi.org/10.1111/tpj.16008
  • Primary Citation of Related Structures:  
    8HEW

  • PubMed Abstract: 

    Structure-based high-throughput screening of chemical compounds that target protein-protein interactions (PPIs) is a promising technology for gaining insight into how plant development is regulated, leading to many potential agricultural applications. At present, there are no examples of using high-throughput screening to identify chemicals that target plant transcriptional complexes, some of which are responsible for regulating multiple physiological functions. Florigen, a protein encoded by FLOWERING LOCUS T (FT), was initially identified as a molecule that promotes flowering and has since been shown to regulate flowering and other developmental phenomena such as tuber formation in potato (Solanum tuberosum). FT functions as a component of the florigen activation complex (FAC) with a 14-3-3 scaffold protein and FD, a bZIP transcription factor that activates downstream gene expression. Although 14-3-3 is an important component of FAC, little is known about the function of the 14-3-3 protein itself. Here, we report the results of a high-throughput in vitro fluorescence resonance energy transfer (FRET) screening of chemical libraries that enabled us to identify small molecules capable of inhibiting FAC formation. These molecules abrogate the in vitro interaction between the 14-3-3 protein and the OsFD1 peptide, a rice (Oryza sativa) FD, by directly binding to the 14-3-3 protein. Treatment with S4, a specific hit molecule, strongly inhibited FAC activity and flowering in duckweed, tuber formation in potato, and branching in rice in a dose-dependent manner. Our results demonstrate that the high-throughput screening approach based on the three-dimensional structure of PPIs is suitable in plants. In this study, we have proposed good candidate compounds for future modification to obtain inhibitors of florigen-dependent processes through inhibition of FAC formation.


  • Organizational Affiliation

    Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
14-3-3 protein233Solanum tuberosumMutation(s): 0 
Gene Names: 30G
UniProt
Find proteins for M1BI71 (Solanum tuberosum)
Explore M1BI71 
Go to UniProtKB:  M1BI71
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM1BI71
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
StFDL1 peptide7Solanum tuberosumMutation(s): 0 
UniProt
Find proteins for A0A1E1F9A2 (Solanum tuberosum)
Explore A0A1E1F9A2 
Go to UniProtKB:  A0A1E1F9A2
Entity Groups  
UniProt GroupA0A1E1F9A2
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
TPO
Query on TPO
B
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.243 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 121.628α = 90
b = 121.628β = 90
c = 69.648γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan17K07609, 16H06464, 16H06466, 17H05836, 19H04856, 20H03191, 16H02532, 21H04728, and 22H04978

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-20
    Type: Initial release
  • Version 1.1: 2024-10-30
    Changes: Structure summary