Crystal structure of PPARgamma ligand-binding domain in complex with N-CoR peptide and SR32904
MacTavish, B.S., Kojetin, D.J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peroxisome proliferator-activated receptor gamma | 276 | Homo sapiens | Mutation(s): 0  Gene Names: PPARG, NR1C3 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P37231 (Homo sapiens) Explore P37231  Go to UniProtKB:  P37231 | |||||
PHAROS:  P37231 GTEx:  ENSG00000132170  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P37231 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nuclear receptor corepressor 1 | B [auth D] | 23 | Homo sapiens | Mutation(s): 0  Gene Names: NCOR1, KIAA1047 | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O75376 (Homo sapiens) Explore O75376  Go to UniProtKB:  O75376 | |||||
PHAROS:  O75376 GTEx:  ENSG00000141027  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O75376 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
Y5T (Subject of Investigation/LOI) Query on Y5T | C [auth A] | 2-chloro-N-(2-methylpyridin-4-yl)-5-nitrobenzamide C13 H10 Cl N3 O3 SQONBECQQLGCLE-UHFFFAOYSA-N | |||
EDO Query on EDO | D [auth A], E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 61.888 | α = 90 |
b = 61.888 | β = 90 |
c = 164.288 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) | United States | 6R01DK124870 |