DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells
Harjes, S., Kurup, H.M., Filichev, V., Harjes, E., Jameson, G.B.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA dC->dU-editing enzyme APOBEC-3A | 199 | Homo sapiens | Mutation(s): 0  Gene Names: APOBEC3A EC: 3.5.4.38 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P31941 (Homo sapiens) Explore P31941  Go to UniProtKB:  P31941 | |||||
GTEx:  ENSG00000128383  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P31941 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*CP*T)-3') | C [auth D], D [auth E] | 12 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | F [auth A] G [auth A] H [auth A] J [auth B] K [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
ZN Query on ZN | E [auth A], I [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 49.943 | α = 90 |
b = 56.365 | β = 104.985 |
c = 90.113 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
JBluIce-EPICS | data collection |
Aimless | data scaling |
pointless | data scaling |
MOLREP | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
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Health Research Council (HRC) | New Zealand | 20/1355 |