Characterization of individual Zn2+ binding sites of YiiP
Lopez-Redondo, M.L., Hussein, A.K., Stokes, D.L.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cadmium and zinc efflux pump FieF | A [auth B], D [auth A] | 296 | Shewanella oneidensis | Mutation(s): 1  Gene Names: fieF, SO_4475 Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for Q8E919 (Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)) Explore Q8E919  Go to UniProtKB:  Q8E919 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8E919 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Fab2r light chain | B [auth E], E [auth C] | 216 | Homo sapiens | Mutation(s): 0  | |
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Fab2r heavy chain | C [auth F], F [auth D] | 238 | Homo sapiens | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN (Subject of Investigation/LOI) Query on ZN | G [auth B] H [auth B] I [auth B] J [auth B] K [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | 1.18 |
RECONSTRUCTION | cryoSPARC | 3.1 |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35GM144109 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01GM125081 |